Gene name: SMD1
Reference locus (S288C): YGR074W
Gene biotype: protein_coding
Description: Small nuclear ribonucleoprotein Sm D1; Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; relocalizes to the cytosol in response to hypoxia; homolog of human Sm D1; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): SMD3 (0.999); SMB1 (0.999); CEF1 (0.999); PRP6 (0.999); SMD2 (0.999); SNU66 (0.999); PRP9 (0.999); LSM5 (0.999); BRR2 (0.999); PRP8 (0.999); SMX2 (0.999); CWC2 (0.999); SMX3 (0.999); SNU114 (0.999); RSE1 (0.999); LSM8 (0.999); LSM2 (0.999); PRP19 (0.999); YHC1 (0.999); LEA1 (0.999)
Homologues (species, bitscore): SNRPD1 (Homo sapiens, 75.5); Snrpd1 (Mus musculus, 75.5); snrpd1 (Danio rerio, 77.0); snrpd1 (Xenopus tropicalis, 73.9); SmD1 (Drosophila melanogaster, 72.8); snr-3 (Caenorhabditis elegans, 68.9); AT3G07590 (Arabidopsis thaliana, 76.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:619403-619843:+ | gene-YGR074W_AKU4011 | rna-NM_001181203.3_AKU4011 | cds-NP_011588.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:55672-56112:+ | gene-YGR074W_BG1 | rna-NM_001181203.3_BG1 | cds-NP_011588.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:621679-622119:+ | gene-YGR074W_Bruggeman | rna-NM_001181203.3_Bruggeman | cds-NP_011588.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:620111-620551:+ | gene-YGR074W_CAT1 | rna-NM_001181203.3_CAT1 | cds-NP_011588.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:620697-621137:+ | gene-YGR074W_CBS1585 | rna-NM_001181203.3_CBS1585 | cds-NP_011588.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:622009-622449:+ | gene-YGR074W_CBS436 | rna-NM_001181203.3_CBS436 | cds-NP_011588.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:613522-613962:+ | gene-YGR074W_CBS6412 | rna-NM_001181203.3_CBS6412 | cds-NP_011588.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:617405-617845:+ | gene-YGR074W_CBS6413 | rna-NM_001181203.3_CBS6413 | cds-NP_011588.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:635418-635858:+ | gene-YGR074W_CENPK1137D | rna-NM_001181203.3_CENPK1137D | cds-NP_011588.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:607656-608096:+ | gene-YGR074W_EthanolRed | rna-NM_001181203.3_EthanolRed | cds-NP_011588.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:611123-611563:+ | gene-YGR074W_FaliES1 | rna-NM_001181203.3_FaliES1 | cds-NP_011588.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000435.1:62059-62499:+ | gene-YGR074W_JAY291 | rna-NM_001181203.3_JAY291 | cds-NP_011588.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:618339-618779:+ | gene-YGR074W_MUCL30387 | rna-NM_001181203.3_MUCL30387 | cds-NP_011588.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:621709-622149:+ | gene-YGR074W_MUCL30388 | rna-NM_001181203.3_MUCL30388 | cds-NP_011588.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:616548-616988:+ | gene-YGR074W_MUCL39482 | rna-NM_001181203.3_MUCL39482 | cds-NP_011588.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:626340-626780:+ | gene-YGR074W_MUCL42920 | rna-NM_001181203.3_MUCL42920 | cds-NP_011588.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:635712-636152:+ | gene-YGR074W_NCIM3186 | rna-NM_001181203.3_NCIM3186 | cds-NP_011588.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:610729-611169:+ | gene-YGR074W_NCYC1407 | rna-NM_001181203.3_NCYC1407 | cds-NP_011588.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:613964-614404:+ | gene-YGR074W_PE2H3 | rna-NM_001181203.3_PE2H3 | cds-NP_011588.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:619088-619528:+ | gene-YGR074W_PE2H4 | rna-NM_001181203.3_PE2H4 | cds-NP_011588.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:635712-636152:+ | gene-YGR074W_S288C | rna-NM_001181203.3_S288C | cds-NP_011588.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:62254-62694:+ | gene-YGR074W_SA1 | rna-NM_001181203.3_SA1 | cds-NP_011588.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:630449-630889:+ | gene-YGR074W_ThermosaccDry | rna-NM_001181203.3_ThermosaccDry | cds-NP_011588.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:727409-727849:+ | gene-YGR074W_VR1 | rna-NM_001181203.3_VR1 | cds-NP_011588.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:85919-86359:+ | gene-YGR074W_ZTW1 | rna-NM_001181203.3_ZTW1 | cds-NP_011588.3_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:620987-621427:+ | gene-YGR074W_Sparadoxus | rna-NM_001181203.3_Sparadoxus | cds-NP_011588.3_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |