Gene name: SMC2
Reference locus (S288C): YFR031C
Gene biotype: protein_coding
Description: Structural maintenance of chromosomes protein 2; Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; essential SMC chromosomal ATPase family member that forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for clustering of tRNA genes at the nucleolus
Top 10 interactors (score): SMC4 (0.999); BRN1 (0.999); SMC3 (0.999); SMC1 (0.999); YCG1 (0.999); YCS4 (0.999); SMC5 (0.995); MCD1 (0.994); IRR1 (0.993); TOP2 (0.992); SMC6 (0.99); NDC80 (0.987); ESP1 (0.977); IPL1 (0.976); POL1 (0.964); MCM2 (0.964); POL3 (0.957); MCM7 (0.954); BUB1 (0.949); POL12 (0.945)
Homologues (species, bitscore): SMC2 (Homo sapiens, 733.4); Smc2 (Mus musculus, 732.3); smc2 (Danio rerio, 746.5); smc2 (Xenopus tropicalis, 703.4); SMC2 (Drosophila melanogaster, 642.9); mix-1 (Caenorhabditis elegans, 478.4); SMC2 (Arabidopsis thaliana, 719.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:206743-210255:- | gene-YFR031C_AKU4011 | rna-NM_001179996.2_AKU4011 | cds-NP_116687.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:50781-54293:+ | gene-YFR031C_BG1 | rna-NM_001179996.2_BG1 | cds-NP_116687.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:210400-213912:- | gene-YFR031C_Bruggeman | rna-NM_001179996.2_Bruggeman | cds-NP_116687.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:212382-215894:- | gene-YFR031C_CAT1 | rna-NM_001179996.2_CAT1 | cds-NP_116687.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:208233-211745:- | gene-YFR031C_CBS1585 | rna-NM_001179996.2_CBS1585 | cds-NP_116687.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:181204-184716:- | gene-YFR031C_CBS436 | rna-NM_001179996.2_CBS436 | cds-NP_116687.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:207312-210824:- | gene-YFR031C_CBS6412 | rna-NM_001179996.2_CBS6412 | cds-NP_116687.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:209970-213482:- | gene-YFR031C_CBS6413 | rna-NM_001179996.2_CBS6413 | cds-NP_116687.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:212693-216205:- | gene-YFR031C_CENPK1137D | rna-NM_001179996.2_CENPK1137D | cds-NP_116687.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:205850-209362:- | gene-YFR031C_EthanolRed | rna-NM_001179996.2_EthanolRed | cds-NP_116687.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:207501-211013:- | gene-YFR031C_FaliES1 | rna-NM_001179996.2_FaliES1 | cds-NP_116687.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:10641-14153:- | gene-YFR031C_JAY291 | rna-NM_001179996.2_JAY291 | cds-NP_116687.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:210835-214347:- | gene-YFR031C_MUCL30387 | rna-NM_001179996.2_MUCL30387 | cds-NP_116687.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:206327-209839:- | gene-YFR031C_MUCL30388 | rna-NM_001179996.2_MUCL30388 | cds-NP_116687.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:206153-209665:- | gene-YFR031C_MUCL39482 | rna-NM_001179996.2_MUCL39482 | cds-NP_116687.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:205508-209020:- | gene-YFR031C_MUCL42920 | rna-NM_001179996.2_MUCL42920 | cds-NP_116687.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:216593-220105:- | gene-YFR031C_NCIM3186 | rna-NM_001179996.2_NCIM3186 | cds-NP_116687.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:207035-210547:- | gene-YFR031C_NCYC1407 | rna-NM_001179996.2_NCYC1407 | cds-NP_116687.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:249048-252560:- | gene-YFR031C_PE2H3 | rna-NM_001179996.2_PE2H3 | cds-NP_116687.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:248596-252108:- | gene-YFR031C_PE2H4 | rna-NM_001179996.2_PE2H4 | cds-NP_116687.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:216594-220106:- | gene-YFR031C_S288C | rna-NM_001179996.2_S288C | cds-NP_116687.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:104363-107875:+ | gene-YFR031C_SA1 | rna-NM_001179996.2_SA1 | cds-NP_116687.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:206658-210170:- | gene-YFR031C_ThermosaccDry | rna-NM_001179996.2_ThermosaccDry | cds-NP_116687.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:222420-225932:- | gene-YFR031C_VR1 | rna-NM_001179996.2_VR1 | cds-NP_116687.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:137129-140641:- | gene-YFR031C_ZTW1 | rna-NM_001179996.2_ZTW1 | cds-NP_116687.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:230316-233828:- | gene-YFR031C_Sparadoxus | rna-NM_001179996.2_Sparadoxus | cds-NP_116687.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |