Gene name: SMC1
Reference locus (S288C): YFL008W
Gene biotype: protein_coding
Description: Structural maintenance of chromosomes protein 1; Subunit of the multiprotein cohesin complex; essential protein involved in chromosome segregation and in double-strand DNA break repair; SMC chromosomal ATPase family member, binds DNA with a preference for DNA with secondary structure; Belongs to the SMC family. SMC1 subfamily
Top 10 interactors (score): MCD1 (0.999); SCC2 (0.999); SMC3 (0.999); NDC80 (0.999); SMC2 (0.999); IRR1 (0.999); PDS5 (0.999); SMC5 (0.998); ECO1 (0.998); ESP1 (0.996); SMC6 (0.996); BUB3 (0.99); CDC5 (0.988); SMC4 (0.987); STU2 (0.976); BRN1 (0.971); CTF18 (0.971); YCG1 (0.97); RAD9 (0.97); CRM1 (0.964)
Homologues (species, bitscore): SMC1A (Homo sapiens, 515.0); Smc1a (Mus musculus, 516.5); smc1al (Danio rerio, 521.5); smc1a (Xenopus tropicalis, 501.5); SMC1 (Drosophila melanogaster, 428.3); him-1 (Caenorhabditis elegans, 430.6); TTN8 (Arabidopsis thaliana, 542.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:115838-119515:+ | gene-YFL008W_AKU4011 | rna-NM_001179958.1_AKU4011 | cds-NP_116647.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000079.1:1562-5239:+ | gene-YFL008W_BG1 | rna-NM_001179958.1_BG1 | cds-NP_116647.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:115405-119082:+ | gene-YFL008W_Bruggeman | rna-NM_001179958.1_Bruggeman | cds-NP_116647.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:121391-125068:+ | gene-YFL008W_CAT1 | rna-NM_001179958.1_CAT1 | cds-NP_116647.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:116663-120340:+ | gene-YFL008W_CBS1585 | rna-NM_001179958.1_CBS1585 | cds-NP_116647.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:91334-95011:+ | gene-YFL008W_CBS436 | rna-NM_001179958.1_CBS436 | cds-NP_116647.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:116404-120081:+ | gene-YFL008W_CBS6412 | rna-NM_001179958.1_CBS6412 | cds-NP_116647.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:118914-122591:+ | gene-YFL008W_CBS6413 | rna-NM_001179958.1_CBS6413 | cds-NP_116647.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:115713-119390:+ | gene-YFL008W_CENPK1137D | rna-NM_001179958.1_CENPK1137D | cds-NP_116647.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:114825-118502:+ | gene-YFL008W_EthanolRed | rna-NM_001179958.1_EthanolRed | cds-NP_116647.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:116472-120149:+ | gene-YFL008W_FaliES1 | rna-NM_001179958.1_FaliES1 | cds-NP_116647.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000450.1:1477-5154:+ | gene-YFL008W_JAY291 | rna-NM_001179958.1_JAY291 | cds-NP_116647.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:117037-120714:+ | gene-YFL008W_MUCL30387 | rna-NM_001179958.1_MUCL30387 | cds-NP_116647.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:115007-118684:+ | gene-YFL008W_MUCL30388 | rna-NM_001179958.1_MUCL30388 | cds-NP_116647.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:115107-118784:+ | gene-YFL008W_MUCL39482 | rna-NM_001179958.1_MUCL39482 | cds-NP_116647.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:114371-118048:+ | gene-YFL008W_MUCL42920 | rna-NM_001179958.1_MUCL42920 | cds-NP_116647.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:119428-123105:+ | gene-YFL008W_NCIM3186 | rna-NM_001179958.1_NCIM3186 | cds-NP_116647.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:116122-119799:+ | gene-YFL008W_NCYC1407 | rna-NM_001179958.1_NCYC1407 | cds-NP_116647.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:136011-139688:+ | gene-YFL008W_PE2H3 | rna-NM_001179958.1_PE2H3 | cds-NP_116647.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:135559-139236:+ | gene-YFL008W_PE2H4 | rna-NM_001179958.1_PE2H4 | cds-NP_116647.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:119429-123106:+ | gene-YFL008W_S288C | rna-NM_001179958.1_S288C | cds-NP_116647.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:194332-198009:- | gene-YFL008W_SA1 | rna-NM_001179958.1_SA1 | cds-NP_116647.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:115632-119309:+ | gene-YFL008W_ThermosaccDry | rna-NM_001179958.1_ThermosaccDry | cds-NP_116647.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:125521-129198:+ | gene-YFL008W_VR1 | rna-NM_001179958.1_VR1 | cds-NP_116647.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:46080-49757:+ | gene-YFL008W_ZTW1 | rna-NM_001179958.1_ZTW1 | cds-NP_116647.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:140142-143828:+ | gene-YFL008W_Sparadoxus | rna-NM_001179958.1_Sparadoxus | cds-NP_116647.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |