Gene name: SMB1
Reference locus (S288C): YER029C
Gene biotype: protein_coding
Description: Small nuclear ribonucleoprotein-associated protein B; Core Sm protein Sm B; part of heteroheptameric complex (with Smd1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm B and Sm B'; Belongs to the snRNP SmB/SmN family
Top 10 interactors (score): PRP19 (0.999); LSM2 (0.999); LSM8 (0.999); RSE1 (0.999); SNU71 (0.999); SNU114 (0.999); SMX3 (0.999); CWC2 (0.999); SMX2 (0.999); SNU66 (0.999); SMD2 (0.999); PRP6 (0.999); CEF1 (0.999); DIB1 (0.999); SMD3 (0.999); HSH49 (0.999); PRP39 (0.999); LSM5 (0.999); CDC40 (0.999); PRP9 (0.999)
Homologues (species, bitscore): SNRPB (Homo sapiens, 84.0); Snrpb (Mus musculus, 83.6); snrpb (Danio rerio, 83.2); snrpb (Xenopus tropicalis, 84.3); SmB (Drosophila melanogaster, 72.8); snr-2 (Caenorhabditis elegans, 73.2); AT5G44500 (Arabidopsis thaliana, 85.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:206614-207204:- | gene-YER029C_AKU4011 | rna-NM_001178920.3_AKU4011 | cds-NP_010946.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:218537-219127:+ | gene-YER029C_BG1 | rna-NM_001178920.3_BG1 | cds-NP_010946.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:215506-216096:- | gene-YER029C_Bruggeman | rna-NM_001178920.3_Bruggeman | cds-NP_010946.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:209616-210206:- | gene-YER029C_CAT1 | rna-NM_001178920.3_CAT1 | cds-NP_010946.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:206537-207127:- | gene-YER029C_CBS1585 | rna-NM_001178920.3_CBS1585 | cds-NP_010946.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:208470-209060:- | gene-YER029C_CBS436 | rna-NM_001178920.3_CBS436 | cds-NP_010946.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:206781-207371:- | gene-YER029C_CBS6412 | rna-NM_001178920.3_CBS6412 | cds-NP_010946.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:212047-212637:- | gene-YER029C_CBS6413 | rna-NM_001178920.3_CBS6413 | cds-NP_010946.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:210526-211116:- | gene-YER029C_CENPK1137D | rna-NM_001178920.3_CENPK1137D | cds-NP_010946.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:207246-207836:- | gene-YER029C_EthanolRed | rna-NM_001178920.3_EthanolRed | cds-NP_010946.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:207511-208101:- | gene-YER029C_FaliES1 | rna-NM_001178920.3_FaliES1 | cds-NP_010946.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:5270-5860:- | gene-YER029C_JAY291 | rna-NM_001178920.3_JAY291 | cds-NP_010946.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:210938-211528:- | gene-YER029C_MUCL30387 | rna-NM_001178920.3_MUCL30387 | cds-NP_010946.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:207170-207760:- | gene-YER029C_MUCL30388 | rna-NM_001178920.3_MUCL30388 | cds-NP_010946.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:205581-206171:- | gene-YER029C_MUCL39482 | rna-NM_001178920.3_MUCL39482 | cds-NP_010946.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:212667-213257:- | gene-YER029C_MUCL42920 | rna-NM_001178920.3_MUCL42920 | cds-NP_010946.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:212586-213176:- | gene-YER029C_NCIM3186 | rna-NM_001178920.3_NCIM3186 | cds-NP_010946.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:210652-211242:- | gene-YER029C_NCYC1407 | rna-NM_001178920.3_NCYC1407 | cds-NP_010946.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:221278-221868:- | gene-YER029C_PE2H3 | rna-NM_001178920.3_PE2H3 | cds-NP_010946.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:211218-211808:- | gene-YER029C_PE2H4 | rna-NM_001178920.3_PE2H4 | cds-NP_010946.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:212587-213177:- | gene-YER029C_S288C | rna-NM_001178920.3_S288C | cds-NP_010946.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:30507-31097:+ | gene-YER029C_SA1 | rna-NM_001178920.3_SA1 | cds-NP_010946.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:208282-208872:- | gene-YER029C_ThermosaccDry | rna-NM_001178920.3_ThermosaccDry | cds-NP_010946.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:207374-207964:- | gene-YER029C_VR1 | rna-NM_001178920.3_VR1 | cds-NP_010946.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:205494-206084:- | gene-YER029C_ZTW1 | rna-NM_001178920.3_ZTW1 | cds-NP_010946.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:209370-209960:- | gene-YER029C_Sparadoxus | rna-NM_001178920.3_Sparadoxus | cds-NP_010946.3_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |