SLZ1 (YNL196C)


Gene profile

Gene name: SLZ1
Reference locus (S288C): YNL196C
Gene biotype: protein_coding

Description: Sporulation-specific protein with a leucine zipper motif; subunit of the MIS complex which controls mRNA methylation during during the induction of sporulation

Top 10 interactors (score): IME4 (0.968); MUM2 (0.963); MPC54 (0.746); PHO92 (0.727); YOL131W (0.68); ADY3 (0.68); YKR005C (0.674); IME1 (0.671); REC102 (0.671); YPR174C (0.654); YBR184W (0.619); BSC4 (0.574); MEI5 (0.57); IRC5 (0.568); MBR1 (0.562); NDT80 (0.553); GMC2 (0.527); KEG1 (0.526); ICS2 (0.525); ECM11 (0.515)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005308.1:264056-264949:- gene-YNL196C_AKU4011 rna-NM_001183034.1_AKU4011 cds-NP_014203.1_AKU4011 98.7 99.6 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000155.1:168000-168896:- gene-YNL196C_BG1 rna-NM_001183034.1_BG1 cds-NP_014203.1_BG1 99.8 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005516.1:274101-274997:- gene-YNL196C_Bruggeman rna-NM_001183034.1_Bruggeman cds-NP_014203.1_Bruggeman 99.8 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005532.1:316343-317239:- gene-YNL196C_CAT1 rna-NM_001183034.1_CAT1 cds-NP_014203.1_CAT1 100.0 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005372.1:264701-265594:- gene-YNL196C_CBS1585 rna-NM_001183034.1_CBS1585 cds-NP_014203.1_CBS1585 98.7 99.6 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005356.1:332986-333882:- gene-YNL196C_CBS436 rna-NM_001183034.1_CBS436 cds-NP_014203.1_CBS436 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005340.1:260113-261006:- gene-YNL196C_CBS6412 rna-NM_001183034.1_CBS6412 cds-NP_014203.1_CBS6412 98.7 99.6 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005324.1:261135-262028:- gene-YNL196C_CBS6413 rna-NM_001183034.1_CBS6413 cds-NP_014203.1_CBS6413 98.7 99.6 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001535.1:264123-265019:- gene-YNL196C_CENPK1137D rna-NM_001183034.1_CENPK1137D cds-NP_014203.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005484.1:261033-261926:- gene-YNL196C_EthanolRed rna-NM_001183034.1_EthanolRed cds-NP_014203.1_EthanolRed 98.7 99.6 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005548.1:256946-257839:- gene-YNL196C_FaliES1 rna-NM_001183034.1_FaliES1 cds-NP_014203.1_FaliES1 98.7 99.6 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000260.1:60536-61433:+ gene-YNL196C_JAY291 rna-NM_001183034.1_JAY291 cds-NP_014203.1_JAY291 99.3 100.0 Unannotated 1 1 0 False False False True False
MUCL30387 GCA_001738515.1 Bread Europe CM005420.1:269897-270790:- gene-YNL196C_MUCL30387 rna-NM_001183034.1_MUCL30387 cds-NP_014203.1_MUCL30387 98.9 99.6 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005452.1:304254-305150:- gene-YNL196C_MUCL30388 rna-NM_001183034.1_MUCL30388 cds-NP_014203.1_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005292.1:261940-262833:- gene-YNL196C_MUCL39482 rna-NM_001183034.1_MUCL39482 cds-NP_014203.1_MUCL39482 98.7 99.6 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005436.1:264304-265200:- gene-YNL196C_MUCL42920 rna-NM_001183034.1_MUCL42920 cds-NP_014203.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011823.1:270244-271140:- gene-YNL196C_NCIM3186 rna-NM_001183034.1_NCIM3186 cds-NP_014203.1_NCIM3186 99.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005276.1:264035-264928:- gene-YNL196C_NCYC1407 rna-NM_001183034.1_NCYC1407 cds-NP_014203.1_NCYC1407 98.6 99.6 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994153.1:260939-261835:- gene-YNL196C_PE2H3 rna-NM_001183034.1_PE2H3 cds-NP_014203.1_PE2H3 99.4 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999885.1:260327-261223:- gene-YNL196C_PE2H4 rna-NM_001183034.1_PE2H4 cds-NP_014203.1_PE2H4 99.4 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001146.8:270275-271171:- gene-YNL196C_S288C rna-NM_001183034.1_S288C cds-NP_014203.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000018.1:142426-143322:+ gene-YNL196C_SA1 rna-NM_001183034.1_SA1 cds-NP_014203.1_SA1 99.8 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005500.1:257803-258696:- gene-YNL196C_ThermosaccDry rna-NM_001183034.1_ThermosaccDry cds-NP_014203.1_ThermosaccDry 98.7 99.6 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005468.1:276291-277187:- gene-YNL196C_VR1 rna-NM_001183034.1_VR1 cds-NP_014203.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000030.1:167632-168524:- gene-YNL196C_ZTW1 rna-NM_001183034.1_ZTW1 cds-NP_014203.1_ZTW1 98.6 99.5 Unannotated 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047500.1:268143-269039:- gene-YNL196C_Sparadoxus rna-NM_001183034.1_Sparadoxus cds-NP_014203.1_Sparadoxus 83.2 100.0 Verified 1 1 0 False False True False False

Additional files