Gene name: SLY1
Reference locus (S288C): YDR189W
Gene biotype: protein_coding
Description: Hydrophilic protein involved in ER/Golgi vesicle trafficking; SM (Sec1/Munc-18) family protein that binds the tSNARE Sed5p and stimulates its assembly into a trans-SNARE membrane-protein complex
Top 10 interactors (score): BET1 (0.999); SED5 (0.999); UFE1 (0.999); SEC22 (0.999); BOS1 (0.998); YKT6 (0.998); COG4 (0.997); SEC18 (0.996); SEC17 (0.994); USE1 (0.993); USO1 (0.991); SEC4 (0.99); GOS1 (0.989); YPT1 (0.988); COG3 (0.978); VPS33 (0.976); SSO1 (0.972); SSO2 (0.965); GRH1 (0.964); SEC23 (0.956)
Homologues (species, bitscore): SCFD1 (Homo sapiens, 364.4); Scfd1 (Mus musculus, 358.2); sly1 (Danio rerio, 369.0); scfd1 (Xenopus tropicalis, 350.5); Slh (Drosophila melanogaster, 347.4); F43D9.3 (Caenorhabditis elegans, 311.2); ATSLY1 (Arabidopsis thaliana, 356.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:806930-808930:+ | gene-YDR189W_AKU4011 | rna-NM_001180497.1_AKU4011 | cds-NP_010475.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:316879-318879:- | gene-YDR189W_BG1 | rna-NM_001180497.1_BG1 | cds-NP_010475.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:839349-841349:+ | gene-YDR189W_Bruggeman | rna-NM_001180497.1_Bruggeman | cds-NP_010475.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:826604-828604:+ | gene-YDR189W_CAT1 | rna-NM_001180497.1_CAT1 | cds-NP_010475.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:797296-799296:+ | gene-YDR189W_CBS1585 | rna-NM_001180497.1_CBS1585 | cds-NP_010475.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:826289-828289:+ | gene-YDR189W_CBS436 | rna-NM_001180497.1_CBS436 | cds-NP_010475.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:794099-796099:+ | gene-YDR189W_CBS6412 | rna-NM_001180497.1_CBS6412 | cds-NP_010475.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:824643-826643:+ | gene-YDR189W_CBS6413 | rna-NM_001180497.1_CBS6413 | cds-NP_010475.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:837233-839233:+ | gene-YDR189W_CENPK1137D | rna-NM_001180497.1_CENPK1137D | cds-NP_010475.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:807692-809692:+ | gene-YDR189W_EthanolRed | rna-NM_001180497.1_EthanolRed | cds-NP_010475.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:815904-817904:+ | gene-YDR189W_FaliES1 | rna-NM_001180497.1_FaliES1 | cds-NP_010475.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:31463-33463:- | gene-YDR189W_JAY291 | rna-NM_001180497.1_JAY291 | cds-NP_010475.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:824994-826994:+ | gene-YDR189W_MUCL30387 | rna-NM_001180497.1_MUCL30387 | cds-NP_010475.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:813237-815237:+ | gene-YDR189W_MUCL30388 | rna-NM_001180497.1_MUCL30388 | cds-NP_010475.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:798743-800743:+ | gene-YDR189W_MUCL39482 | rna-NM_001180497.1_MUCL39482 | cds-NP_010475.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:737436-739436:+ | gene-YDR189W_MUCL42920 | rna-NM_001180497.1_MUCL42920 | cds-NP_010475.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:838315-840315:+ | gene-YDR189W_NCIM3186 | rna-NM_001180497.1_NCIM3186 | cds-NP_010475.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:801875-803875:+ | gene-YDR189W_NCYC1407 | rna-NM_001180497.1_NCYC1407 | cds-NP_010475.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:818619-820619:+ | gene-YDR189W_PE2H3 | rna-NM_001180497.1_PE2H3 | cds-NP_010475.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:817924-819924:+ | gene-YDR189W_PE2H4 | rna-NM_001180497.1_PE2H4 | cds-NP_010475.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:838392-840392:+ | gene-YDR189W_S288C | rna-NM_001180497.1_S288C | cds-NP_010475.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:184103-186103:+ | gene-YDR189W_SA1 | rna-NM_001180497.1_SA1 | cds-NP_010475.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:814059-816059:+ | gene-YDR189W_ThermosaccDry | rna-NM_001180497.1_ThermosaccDry | cds-NP_010475.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:829284-831284:+ | gene-YDR189W_VR1 | rna-NM_001180497.1_VR1 | cds-NP_010475.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:76772-78772:+ | gene-YDR189W_ZTW1 | rna-NM_001180497.1_ZTW1 | cds-NP_010475.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:818982-820982:+ | gene-YDR189W_Sparadoxus | rna-NM_001180497.1_Sparadoxus | cds-NP_010475.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |