Gene name: SLX9
Reference locus (S288C): YGR081C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein SLX9; Protein required for pre-rRNA processing; associated with the 90S pre-ribosome and 43S small ribosomal subunit precursor; interacts with U3 snoRNA; deletion mutant has synthetic fitness defect with an sgs1 deletion mutant
Top 10 interactors (score): UTP5 (0.999); ENP1 (0.999); KRR1 (0.999); UTP6 (0.999); DHR2 (0.999); HAS1 (0.998); TSR1 (0.994); IMP4 (0.993); UTP18 (0.992); CKA1 (0.991); CKB1 (0.991); SQS1 (0.991); RRP12 (0.991); UTP22 (0.991); BFR2 (0.99); UTP30 (0.984); ENP2 (0.982); PNO1 (0.982); ROK1 (0.982); MRD1 (0.982)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:626832-627464:- | gene-YGR081C_AKU4011 | rna-NM_001181210.3_AKU4011 | cds-NP_011595.3_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:63103-63735:- | gene-YGR081C_BG1 | rna-NM_001181210.3_BG1 | cds-NP_011595.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:629101-629733:- | gene-YGR081C_Bruggeman | rna-NM_001181210.3_Bruggeman | cds-NP_011595.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:627540-628172:- | gene-YGR081C_CAT1 | rna-NM_001181210.3_CAT1 | cds-NP_011595.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:628113-628745:- | gene-YGR081C_CBS1585 | rna-NM_001181210.3_CBS1585 | cds-NP_011595.3_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:629459-630091:- | gene-YGR081C_CBS436 | rna-NM_001181210.3_CBS436 | cds-NP_011595.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:620958-621590:- | gene-YGR081C_CBS6412 | rna-NM_001181210.3_CBS6412 | cds-NP_011595.3_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:624759-625391:- | gene-YGR081C_CBS6413 | rna-NM_001181210.3_CBS6413 | cds-NP_011595.3_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:642834-643466:- | gene-YGR081C_CENPK1137D | rna-NM_001181210.3_CENPK1137D | cds-NP_011595.3_CENPK1137D | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:615085-615717:- | gene-YGR081C_EthanolRed | rna-NM_001181210.3_EthanolRed | cds-NP_011595.3_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:618550-619182:- | gene-YGR081C_FaliES1 | rna-NM_001181210.3_FaliES1 | cds-NP_011595.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000435.1:69493-70125:- | gene-YGR081C_JAY291 | rna-NM_001181210.3_JAY291 | cds-NP_011595.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:625777-626409:- | gene-YGR081C_MUCL30387 | rna-NM_001181210.3_MUCL30387 | cds-NP_011595.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:629145-629777:- | gene-YGR081C_MUCL30388 | rna-NM_001181210.3_MUCL30388 | cds-NP_011595.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:623977-624609:- | gene-YGR081C_MUCL39482 | rna-NM_001181210.3_MUCL39482 | cds-NP_011595.3_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:633777-634409:- | gene-YGR081C_MUCL42920 | rna-NM_001181210.3_MUCL42920 | cds-NP_011595.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:643148-643780:- | gene-YGR081C_NCIM3186 | rna-NM_001181210.3_NCIM3186 | cds-NP_011595.3_NCIM3186 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:618153-618785:- | gene-YGR081C_NCYC1407 | rna-NM_001181210.3_NCYC1407 | cds-NP_011595.3_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:621397-622029:- | gene-YGR081C_PE2H3 | rna-NM_001181210.3_PE2H3 | cds-NP_011595.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:626517-627149:- | gene-YGR081C_PE2H4 | rna-NM_001181210.3_PE2H4 | cds-NP_011595.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:643148-643780:- | gene-YGR081C_S288C | rna-NM_001181210.3_S288C | cds-NP_011595.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:69721-70353:- | gene-YGR081C_SA1 | rna-NM_001181210.3_SA1 | cds-NP_011595.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:637861-638493:- | gene-YGR081C_ThermosaccDry | rna-NM_001181210.3_ThermosaccDry | cds-NP_011595.3_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:734842-735474:- | gene-YGR081C_VR1 | rna-NM_001181210.3_VR1 | cds-NP_011595.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:93344-93976:- | gene-YGR081C_ZTW1 | rna-NM_001181210.3_ZTW1 | cds-NP_011595.3_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:628451-629083:- | gene-YGR081C_Sparadoxus | rna-NM_001181210.3_Sparadoxus | cds-NP_011595.3_Sparadoxus | 87.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |