Gene name: SLX1
Reference locus (S288C): YBR228W
Gene biotype: protein_coding
Description: Endonuclease involved in DNA recombination and repair; subunit of a complex, with Slx4p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p
Top 10 interactors (score): MUS81 (0.999); SLX4 (0.998); SGS1 (0.997); RMI1 (0.984); TOP3 (0.984); RTT107 (0.982); RAD1 (0.979); DPB11 (0.975); YEN1 (0.973); RAD10 (0.966); MSH3 (0.959); SPO11 (0.948); RAD51 (0.947); EXO1 (0.947); RAD52 (0.919); MLH1 (0.91); MEC1 (0.907); RAD54 (0.906); MMS4 (0.888); RAD27 (0.884)
Homologues (species, bitscore): SLX1A (Homo sapiens, 91.3); Slx1b (Mus musculus, 91.3); SLX1A (Danio rerio, 91.7); slx1a (Xenopus tropicalis, 93.6); slx1 (Drosophila melanogaster, 104.4); slx-1 (Caenorhabditis elegans, 76.6); AT2G30350 (Arabidopsis thaliana, 100.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:659622-660536:+ | gene-YBR228W_AKU4011 | rna-NM_001178576.3_AKU4011 | cds-NP_009787.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:30541-31455:+ | gene-YBR228W_BG1 | rna-NM_001178576.3_BG1 | cds-NP_009787.3_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:660775-661689:+ | gene-YBR228W_Bruggeman | rna-NM_001178576.3_Bruggeman | cds-NP_009787.3_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:663980-664894:+ | gene-YBR228W_CAT1 | rna-NM_001178576.3_CAT1 | cds-NP_009787.3_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:651154-652068:+ | gene-YBR228W_CBS1585 | rna-NM_001178576.3_CBS1585 | cds-NP_009787.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:657577-658491:+ | gene-YBR228W_CBS436 | rna-NM_001178576.3_CBS436 | cds-NP_009787.3_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:746131-747045:+ | gene-YBR228W_CBS6412 | rna-NM_001178576.3_CBS6412 | cds-NP_009787.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:657192-658106:+ | gene-YBR228W_CBS6413 | rna-NM_001178576.3_CBS6413 | cds-NP_009787.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:669092-670006:+ | gene-YBR228W_CENPK1137D | rna-NM_001178576.3_CENPK1137D | cds-NP_009787.3_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:782863-783777:+ | gene-YBR228W_EthanolRed | rna-NM_001178576.3_EthanolRed | cds-NP_009787.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:675970-676884:+ | gene-YBR228W_FaliES1 | rna-NM_001178576.3_FaliES1 | cds-NP_009787.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:125469-126383:- | gene-YBR228W_JAY291 | rna-NM_001178576.3_JAY291 | cds-NP_009787.3_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:662789-663703:+ | gene-YBR228W_MUCL30387 | rna-NM_001178576.3_MUCL30387 | cds-NP_009787.3_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:679868-680782:+ | gene-YBR228W_MUCL30388 | rna-NM_001178576.3_MUCL30388 | cds-NP_009787.3_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:649506-650420:+ | gene-YBR228W_MUCL39482 | rna-NM_001178576.3_MUCL39482 | cds-NP_009787.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:659347-660261:+ | gene-YBR228W_MUCL42920 | rna-NM_001178576.3_MUCL42920 | cds-NP_009787.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:675110-676024:+ | gene-YBR228W_NCIM3186 | rna-NM_001178576.3_NCIM3186 | cds-NP_009787.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:651368-652282:+ | gene-YBR228W_NCYC1407 | rna-NM_001178576.3_NCYC1407 | cds-NP_009787.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:674482-675396:+ | gene-YBR228W_PE2H3 | rna-NM_001178576.3_PE2H3 | cds-NP_009787.3_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:672158-673072:+ | gene-YBR228W_PE2H4 | rna-NM_001178576.3_PE2H4 | cds-NP_009787.3_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:675313-676227:+ | gene-YBR228W_S288C | rna-NM_001178576.3_S288C | cds-NP_009787.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:30439-31353:+ | gene-YBR228W_SA1 | rna-NM_001178576.3_SA1 | cds-NP_009787.3_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:674980-675894:+ | gene-YBR228W_ThermosaccDry | rna-NM_001178576.3_ThermosaccDry | cds-NP_009787.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:655155-656069:+ | gene-YBR228W_VR1 | rna-NM_001178576.3_VR1 | cds-NP_009787.3_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:647846-648760:+ | gene-YBR228W_ZTW1 | rna-NM_001178576.3_ZTW1 | cds-NP_009787.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:691816-692730:+ | gene-YBR228W_Sparadoxus | rna-NM_001178576.3_Sparadoxus | cds-NP_009787.3_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |