Gene name: SLU7
Reference locus (S288C): YDR088C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SLU7; RNA splicing factor; required for ATP-independent portion of 2nd catalytic step of spliceosomal RNA splicing; interacts with Prp18p; contains zinc knuckle domain; Belongs to the SLU7 family
Top 10 interactors (score): PRP22 (0.999); PRP18 (0.999); SNT309 (0.999); CLF1 (0.999); PRP19 (0.999); PRP8 (0.999); CDC40 (0.999); CEF1 (0.999); PRP16 (0.998); BUD31 (0.998); ECM2 (0.997); CWC22 (0.997); BRR2 (0.996); SYF1 (0.995); CWC25 (0.995); YJU2 (0.995); SNU114 (0.995); CWC15 (0.994); CWC2 (0.994); BUD13 (0.989)
Homologues (species, bitscore): SLU7 (Homo sapiens, 60.5); Slu7 (Mus musculus, 60.8); slu7 (Danio rerio, 62.4); slu7 (Xenopus tropicalis, 59.3); Slu7 (Drosophila melanogaster, 84.0); K07C5.6 (Caenorhabditis elegans, 68.6); F5I14.19 (Arabidopsis thaliana, 71.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:596052-597200:- | gene-YDR088C_AKU4011 | rna-NM_001180396.3_AKU4011 | cds-NP_010373.3_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:528117-529265:+ | gene-YDR088C_BG1 | rna-NM_001180396.3_BG1 | cds-NP_010373.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:628283-629431:- | gene-YDR088C_Bruggeman | rna-NM_001180396.3_Bruggeman | cds-NP_010373.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:612967-614115:- | gene-YDR088C_CAT1 | rna-NM_001180396.3_CAT1 | cds-NP_010373.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:587073-588221:- | gene-YDR088C_CBS1585 | rna-NM_001180396.3_CBS1585 | cds-NP_010373.3_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:612087-613235:- | gene-YDR088C_CBS436 | rna-NM_001180396.3_CBS436 | cds-NP_010373.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:583486-584634:- | gene-YDR088C_CBS6412 | rna-NM_001180396.3_CBS6412 | cds-NP_010373.3_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:612018-613166:- | gene-YDR088C_CBS6413 | rna-NM_001180396.3_CBS6413 | cds-NP_010373.3_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:617538-618686:- | gene-YDR088C_CENPK1137D | rna-NM_001180396.3_CENPK1137D | cds-NP_010373.3_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:597843-598991:- | gene-YDR088C_EthanolRed | rna-NM_001180396.3_EthanolRed | cds-NP_010373.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:604637-605785:- | gene-YDR088C_FaliES1 | rna-NM_001180396.3_FaliES1 | cds-NP_010373.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:25484-26632:+ | gene-YDR088C_JAY291 | rna-NM_001180396.3_JAY291 | cds-NP_010373.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:612900-614048:- | gene-YDR088C_MUCL30387 | rna-NM_001180396.3_MUCL30387 | cds-NP_010373.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:603212-604360:- | gene-YDR088C_MUCL30388 | rna-NM_001180396.3_MUCL30388 | cds-NP_010373.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:588443-589591:- | gene-YDR088C_MUCL39482 | rna-NM_001180396.3_MUCL39482 | cds-NP_010373.3_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:519896-521044:- | gene-YDR088C_MUCL42920 | rna-NM_001180396.3_MUCL42920 | cds-NP_010373.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:618420-619568:- | gene-YDR088C_NCIM3186 | rna-NM_001180396.3_NCIM3186 | cds-NP_010373.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:587350-588498:- | gene-YDR088C_NCYC1407 | rna-NM_001180396.3_NCYC1407 | cds-NP_010373.3_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:606819-607967:- | gene-YDR088C_PE2H3 | rna-NM_001180396.3_PE2H3 | cds-NP_010373.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:606124-607272:- | gene-YDR088C_PE2H4 | rna-NM_001180396.3_PE2H4 | cds-NP_010373.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:618497-619645:- | gene-YDR088C_S288C | rna-NM_001180396.3_S288C | cds-NP_010373.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:25692-26840:+ | gene-YDR088C_SA1 | rna-NM_001180396.3_SA1 | cds-NP_010373.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:604167-605315:- | gene-YDR088C_ThermosaccDry | rna-NM_001180396.3_ThermosaccDry | cds-NP_010373.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:616718-617866:- | gene-YDR088C_VR1 | rna-NM_001180396.3_VR1 | cds-NP_010373.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:601750-602898:- | gene-YDR088C_ZTW1 | rna-NM_001180396.3_ZTW1 | cds-NP_010373.3_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:606473-607621:- | gene-YDR088C_Sparadoxus | rna-NM_001180396.3_Sparadoxus | cds-NP_010373.3_Sparadoxus | 88.2 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |