SLS1 (YLR139C)


Gene profile

Gene name: SLS1
Reference locus (S288C): YLR139C
Gene biotype: protein_coding

Description: Sigma-like sequence protein 1, mitochondrial; Mitochondrial membrane protein; coordinates expression of mitochondrially-encoded genes; may facilitate delivery of mRNA to membrane-bound translation machinery; Belongs to the SLS1 family

Top 10 interactors (score): MTF2 (0.804); PUF3 (0.463); RPO41 (0.448); HAS1 (0.404); RPL4B (0.404); ADH3 (0.4)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:404034-405968:- gene-YLR139C_AKU4011 rna-NM_001182026.1_AKU4011 cds-NP_013240.1_AKU4011 99.1 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000212.1:367802-369733:- gene-YLR139C_BG1 rna-NM_001182026.1_BG1 cds-NP_013240.1_BG1 100.0 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:415906-417837:- gene-YLR139C_Bruggeman rna-NM_001182026.1_Bruggeman cds-NP_013240.1_Bruggeman 99.8 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:415312-417243:- gene-YLR139C_CAT1 rna-NM_001182026.1_CAT1 cds-NP_013240.1_CAT1 99.7 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:411178-413112:- gene-YLR139C_CBS1585 rna-NM_001182026.1_CBS1585 cds-NP_013240.1_CBS1585 99.1 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:401402-403333:- gene-YLR139C_CBS436 rna-NM_001182026.1_CBS436 cds-NP_013240.1_CBS436 99.9 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:409595-411529:- gene-YLR139C_CBS6412 rna-NM_001182026.1_CBS6412 cds-NP_013240.1_CBS6412 99.1 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:411443-413377:- gene-YLR139C_CBS6413 rna-NM_001182026.1_CBS6413 cds-NP_013240.1_CBS6413 99.1 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:406561-408492:- gene-YLR139C_CENPK1137D rna-NM_001182026.1_CENPK1137D cds-NP_013240.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:404235-406169:- gene-YLR139C_EthanolRed rna-NM_001182026.1_EthanolRed cds-NP_013240.1_EthanolRed 99.1 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:403746-405680:- gene-YLR139C_FaliES1 rna-NM_001182026.1_FaliES1 cds-NP_013240.1_FaliES1 99.1 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000061.1:10406-12337:- gene-YLR139C_JAY291 rna-NM_001182026.1_JAY291 cds-NP_013240.1_JAY291 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:415908-417839:- gene-YLR139C_MUCL30387 rna-NM_001182026.1_MUCL30387 cds-NP_013240.1_MUCL30387 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:420711-422642:- gene-YLR139C_MUCL30388 rna-NM_001182026.1_MUCL30388 cds-NP_013240.1_MUCL30388 99.9 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:411687-413621:- gene-YLR139C_MUCL39482 rna-NM_001182026.1_MUCL39482 cds-NP_013240.1_MUCL39482 99.1 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:411818-413749:- gene-YLR139C_MUCL42920 rna-NM_001182026.1_MUCL42920 cds-NP_013240.1_MUCL42920 99.8 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:421516-423447:- gene-YLR139C_NCIM3186 rna-NM_001182026.1_NCIM3186 cds-NP_013240.1_NCIM3186 99.0 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:403959-405893:- gene-YLR139C_NCYC1407 rna-NM_001182026.1_NCYC1407 cds-NP_013240.1_NCYC1407 99.1 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:409512-411443:- gene-YLR139C_PE2H3 rna-NM_001182026.1_PE2H3 cds-NP_013240.1_PE2H3 100.0 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:409253-411184:- gene-YLR139C_PE2H4 rna-NM_001182026.1_PE2H4 cds-NP_013240.1_PE2H4 100.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:421542-423473:- gene-YLR139C_S288C rna-NM_001182026.1_S288C cds-NP_013240.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000055.1:47448-49379:- gene-YLR139C_SA1 rna-NM_001182026.1_SA1 cds-NP_013240.1_SA1 99.4 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:404956-406890:- gene-YLR139C_ThermosaccDry rna-NM_001182026.1_ThermosaccDry cds-NP_013240.1_ThermosaccDry 99.1 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:417653-419584:- gene-YLR139C_VR1 rna-NM_001182026.1_VR1 cds-NP_013240.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000023.1:402746-404677:- gene-YLR139C_ZTW1 rna-NM_001182026.1_ZTW1 cds-NP_013240.1_ZTW1 99.2 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:412754-414676:- gene-YLR139C_Sparadoxus rna-NM_001182026.1_Sparadoxus cds-NP_013240.1_Sparadoxus 88.1 99.5 Verified 1 1 1 False True False False False

Additional files