Gene name: SLS1
Reference locus (S288C): YLR139C
Gene biotype: protein_coding
Description: Sigma-like sequence protein 1, mitochondrial; Mitochondrial membrane protein; coordinates expression of mitochondrially-encoded genes; may facilitate delivery of mRNA to membrane-bound translation machinery; Belongs to the SLS1 family
Top 10 interactors (score): MTF2 (0.804); PUF3 (0.463); RPO41 (0.448); HAS1 (0.404); RPL4B (0.404); ADH3 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:404034-405968:- | gene-YLR139C_AKU4011 | rna-NM_001182026.1_AKU4011 | cds-NP_013240.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:367802-369733:- | gene-YLR139C_BG1 | rna-NM_001182026.1_BG1 | cds-NP_013240.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:415906-417837:- | gene-YLR139C_Bruggeman | rna-NM_001182026.1_Bruggeman | cds-NP_013240.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:415312-417243:- | gene-YLR139C_CAT1 | rna-NM_001182026.1_CAT1 | cds-NP_013240.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:411178-413112:- | gene-YLR139C_CBS1585 | rna-NM_001182026.1_CBS1585 | cds-NP_013240.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:401402-403333:- | gene-YLR139C_CBS436 | rna-NM_001182026.1_CBS436 | cds-NP_013240.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:409595-411529:- | gene-YLR139C_CBS6412 | rna-NM_001182026.1_CBS6412 | cds-NP_013240.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:411443-413377:- | gene-YLR139C_CBS6413 | rna-NM_001182026.1_CBS6413 | cds-NP_013240.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:406561-408492:- | gene-YLR139C_CENPK1137D | rna-NM_001182026.1_CENPK1137D | cds-NP_013240.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:404235-406169:- | gene-YLR139C_EthanolRed | rna-NM_001182026.1_EthanolRed | cds-NP_013240.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:403746-405680:- | gene-YLR139C_FaliES1 | rna-NM_001182026.1_FaliES1 | cds-NP_013240.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000061.1:10406-12337:- | gene-YLR139C_JAY291 | rna-NM_001182026.1_JAY291 | cds-NP_013240.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:415908-417839:- | gene-YLR139C_MUCL30387 | rna-NM_001182026.1_MUCL30387 | cds-NP_013240.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:420711-422642:- | gene-YLR139C_MUCL30388 | rna-NM_001182026.1_MUCL30388 | cds-NP_013240.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:411687-413621:- | gene-YLR139C_MUCL39482 | rna-NM_001182026.1_MUCL39482 | cds-NP_013240.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:411818-413749:- | gene-YLR139C_MUCL42920 | rna-NM_001182026.1_MUCL42920 | cds-NP_013240.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:421516-423447:- | gene-YLR139C_NCIM3186 | rna-NM_001182026.1_NCIM3186 | cds-NP_013240.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:403959-405893:- | gene-YLR139C_NCYC1407 | rna-NM_001182026.1_NCYC1407 | cds-NP_013240.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:409512-411443:- | gene-YLR139C_PE2H3 | rna-NM_001182026.1_PE2H3 | cds-NP_013240.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:409253-411184:- | gene-YLR139C_PE2H4 | rna-NM_001182026.1_PE2H4 | cds-NP_013240.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:421542-423473:- | gene-YLR139C_S288C | rna-NM_001182026.1_S288C | cds-NP_013240.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:47448-49379:- | gene-YLR139C_SA1 | rna-NM_001182026.1_SA1 | cds-NP_013240.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:404956-406890:- | gene-YLR139C_ThermosaccDry | rna-NM_001182026.1_ThermosaccDry | cds-NP_013240.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:417653-419584:- | gene-YLR139C_VR1 | rna-NM_001182026.1_VR1 | cds-NP_013240.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:402746-404677:- | gene-YLR139C_ZTW1 | rna-NM_001182026.1_ZTW1 | cds-NP_013240.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:412754-414676:- | gene-YLR139C_Sparadoxus | rna-NM_001182026.1_Sparadoxus | cds-NP_013240.1_Sparadoxus | 88.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |