Gene name: SLO1
Reference locus (S288C): YER180C-A
Gene biotype: protein_coding
Description: SCOCO-like protein 1; Protein interacting with Arl3p; Arl3p is a GTPase of the Ras superfamily involved in vesicle-tethering at the Golgi; putative ortholog of human SCOCO
Top 10 interactors (score): YEL014C (0.896); NPP2 (0.891); MXR1 (0.697); ZRG8 (0.572); HHY1 (0.558); VAC8 (0.497); EMP65 (0.483); YCR007C (0.482); ARB1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:532378-532635:- | gene-YER180C-A_AKU4011 | rna-NM_001184517.3_AKU4011 | cds-NP_796378.3_AKU4011 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:734-991:+ | gene-YER180C-A_BG1 | rna-NM_001184517.3_BG1 | cds-NP_796378.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:545125-545382:- | gene-YER180C-A_Bruggeman | rna-NM_001184517.3_Bruggeman | cds-NP_796378.3_Bruggeman | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:531713-531970:- | gene-YER180C-A_CAT1 | rna-NM_001184517.3_CAT1 | cds-NP_796378.3_CAT1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:532182-532439:- | gene-YER180C-A_CBS1585 | rna-NM_001184517.3_CBS1585 | cds-NP_796378.3_CBS1585 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:542074-542331:- | gene-YER180C-A_CBS436 | rna-NM_001184517.3_CBS436 | cds-NP_796378.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:530159-530416:- | gene-YER180C-A_CBS6412 | rna-NM_001184517.3_CBS6412 | cds-NP_796378.3_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:538728-538985:- | gene-YER180C-A_CBS6413 | rna-NM_001184517.3_CBS6413 | cds-NP_796378.3_CBS6413 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:548630-548887:- | gene-YER180C-A_CENPK1137D | rna-NM_001184517.3_CENPK1137D | cds-NP_796378.3_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:538345-538602:- | gene-YER180C-A_EthanolRed | rna-NM_001184517.3_EthanolRed | cds-NP_796378.3_EthanolRed | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:539281-539538:- | gene-YER180C-A_FaliES1 | rna-NM_001184517.3_FaliES1 | cds-NP_796378.3_FaliES1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:359-616:+ | gene-YER180C-A_JAY291 | rna-NM_001184517.3_JAY291 | cds-NP_796378.3_JAY291 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:532435-532692:- | gene-YER180C-A_MUCL30387 | rna-NM_001184517.3_MUCL30387 | cds-NP_796378.3_MUCL30387 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:535348-535605:- | gene-YER180C-A_MUCL30388 | rna-NM_001184517.3_MUCL30388 | cds-NP_796378.3_MUCL30388 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:528140-528397:- | gene-YER180C-A_MUCL39482 | rna-NM_001184517.3_MUCL39482 | cds-NP_796378.3_MUCL39482 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:542667-542924:- | gene-YER180C-A_MUCL42920 | rna-NM_001184517.3_MUCL42920 | cds-NP_796378.3_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:550864-551121:- | gene-YER180C-A_NCIM3186 | rna-NM_001184517.3_NCIM3186 | cds-NP_796378.3_NCIM3186 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:537596-537853:- | gene-YER180C-A_NCYC1407 | rna-NM_001184517.3_NCYC1407 | cds-NP_796378.3_NCYC1407 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:553537-553794:- | gene-YER180C-A_PE2H3 | rna-NM_001184517.3_PE2H3 | cds-NP_796378.3_PE2H3 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:543470-543727:- | gene-YER180C-A_PE2H4 | rna-NM_001184517.3_PE2H4 | cds-NP_796378.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:550865-551122:- | gene-YER180C-A_S288C | rna-NM_001184517.3_S288C | cds-NP_796378.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:103020-103277:- | gene-YER180C-A_SA1 | rna-NM_001184517.3_SA1 | cds-NP_796378.3_SA1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:540081-540338:- | gene-YER180C-A_ThermosaccDry | rna-NM_001184517.3_ThermosaccDry | cds-NP_796378.3_ThermosaccDry | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:533373-533630:- | gene-YER180C-A_VR1 | rna-NM_001184517.3_VR1 | cds-NP_796378.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:52935-53192:- | gene-YER180C-A_ZTW1 | rna-NM_001184517.3_ZTW1 | cds-NP_796378.3_ZTW1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |