Gene name: SLN1
Reference locus (S288C): YIL147C
Gene biotype: protein_coding
Description: Osmosensing histidine protein kinase SLN1; Transmembrane histidine phosphotransfer kinase and osmosensor; regulates MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators
Top 10 interactors (score): YPD1 (0.999); HOG1 (0.99); SSK2 (0.983); SHO1 (0.981); PBS2 (0.973); SSK22 (0.972); OCH1 (0.92); STE11 (0.911); PTP2 (0.908); MSB2 (0.905); HKR1 (0.895); OPY2 (0.856); SKN7 (0.855); PTC1 (0.844); FPS1 (0.843); CDC4 (0.838); STE20 (0.826); SSK1 (0.819); STE50 (0.795); HOT1 (0.768)
Homologues (species, bitscore): WOL (Arabidopsis thaliana, 169.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:71010-74672:- | gene-YIL147C_AKU4011 | rna-NM_001179495.1_AKU4011 | cds-NP_012119.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:62691-66353:+ | gene-YIL147C_BG1 | rna-NM_001179495.1_BG1 | cds-NP_012119.1_BG1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:73772-77434:- | gene-YIL147C_Bruggeman | rna-NM_001179495.1_Bruggeman | cds-NP_012119.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:67579-71241:- | gene-YIL147C_CAT1 | rna-NM_001179495.1_CAT1 | cds-NP_012119.1_CAT1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:71213-74875:- | gene-YIL147C_CBS1585 | rna-NM_001179495.1_CBS1585 | cds-NP_012119.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:62353-66015:- | gene-YIL147C_CBS436 | rna-NM_001179495.1_CBS436 | cds-NP_012119.1_CBS436 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:68742-72404:- | gene-YIL147C_CBS6412 | rna-NM_001179495.1_CBS6412 | cds-NP_012119.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:62897-66559:- | gene-YIL147C_CBS6413 | rna-NM_001179495.1_CBS6413 | cds-NP_012119.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:61495-65157:- | gene-YIL147C_CENPK1137D | rna-NM_001179495.1_CENPK1137D | cds-NP_012119.1_CENPK1137D | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:56544-60206:- | gene-YIL147C_EthanolRed | rna-NM_001179495.1_EthanolRed | cds-NP_012119.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:72347-76009:- | gene-YIL147C_FaliES1 | rna-NM_001179495.1_FaliES1 | cds-NP_012119.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000319.1:32345-36007:+ | gene-YIL147C_JAY291 | rna-NM_001179495.1_JAY291 | cds-NP_012119.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:71528-75190:- | gene-YIL147C_MUCL30387 | rna-NM_001179495.1_MUCL30387 | cds-NP_012119.1_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:70776-74438:- | gene-YIL147C_MUCL30388 | rna-NM_001179495.1_MUCL30388 | cds-NP_012119.1_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:72138-75800:- | gene-YIL147C_MUCL39482 | rna-NM_001179495.1_MUCL39482 | cds-NP_012119.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:75340-79002:- | gene-YIL147C_MUCL42920 | rna-NM_001179495.1_MUCL42920 | cds-NP_012119.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:69791-73453:- | gene-YIL147C_NCIM3186 | rna-NM_001179495.1_NCIM3186 | cds-NP_012119.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:76103-79765:- | gene-YIL147C_NCYC1407 | rna-NM_001179495.1_NCYC1407 | cds-NP_012119.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:70724-74386:- | gene-YIL147C_PE2H3 | rna-NM_001179495.1_PE2H3 | cds-NP_012119.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:64686-68348:- | gene-YIL147C_PE2H4 | rna-NM_001179495.1_PE2H4 | cds-NP_012119.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:69791-73453:- | gene-YIL147C_S288C | rna-NM_001179495.1_S288C | cds-NP_012119.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000050.1:48367-52029:- | gene-YIL147C_SA1 | rna-NM_001179495.1_SA1 | cds-NP_012119.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:70957-74619:- | gene-YIL147C_ThermosaccDry | rna-NM_001179495.1_ThermosaccDry | cds-NP_012119.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:68116-71778:- | gene-YIL147C_VR1 | rna-NM_001179495.1_VR1 | cds-NP_012119.1_VR1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:45940-49602:- | gene-YIL147C_ZTW1 | rna-NM_001179495.1_ZTW1 | cds-NP_012119.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:63725-67390:- | gene-YIL147C_Sparadoxus | rna-NM_001179495.1_Sparadoxus | cds-NP_012119.1_Sparadoxus | 89.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |