SLM6 (YBR266C)

Gene profile

Gene name: SLM6
Reference locus (S288C): YBR266C
Gene biotype: protein_coding

Description: Protein slm6; Protein with a potential role in actin cytoskeleton organization; gene exhibits synthetic genetic interaction with MSS4 encoding phosphatidylinositol 4-phosphate kinase

Top 10 interactors (score): YBR259W (0.945); MTC4 (0.918); POP4 (0.891); SHG1 (0.811); TRS20 (0.766)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005296.1:724219-724671:- gene-YBR266C_AKU4011 rna-NM_001395042.1_AKU4011 cds-NP_001381962.1_AKU4011 98.8 100.0 Mismatch 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000066.1:95243-95695:- gene-YBR266C_BG1 rna-NM_001395042.1_BG1 cds-NP_001381962.1_BG1 100.0 100.0 Mismatch 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005504.1:725383-725835:- gene-YBR266C_Bruggeman rna-NM_001395042.1_Bruggeman cds-NP_001381962.1_Bruggeman 100.0 100.0 Mismatch 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005520.1:729109-729561:- gene-YBR266C_CAT1 rna-NM_001395042.1_CAT1 cds-NP_001381962.1_CAT1 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005360.1:715785-716237:- gene-YBR266C_CBS1585 rna-NM_001395042.1_CBS1585 cds-NP_001381962.1_CBS1585 98.8 100.0 Mismatch 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005344.1:722230-722682:- gene-YBR266C_CBS436 rna-NM_001395042.1_CBS436 cds-NP_001381962.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:810400-810852:- gene-YBR266C_CBS6412 rna-NM_001395042.1_CBS6412 cds-NP_001381962.1_CBS6412 98.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005312.1:721833-722285:- gene-YBR266C_CBS6413 rna-NM_001395042.1_CBS6413 cds-NP_001381962.1_CBS6413 98.8 100.0 Mismatch 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001523.1:733843-734295:- gene-YBR266C_CENPK1137D rna-NM_001395042.1_CENPK1137D cds-NP_001381962.1_CENPK1137D 100.0 100.0 Mismatch 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005472.1:847254-847706:- gene-YBR266C_EthanolRed rna-NM_001395042.1_EthanolRed cds-NP_001381962.1_EthanolRed 98.6 100.0 Mismatch 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005536.1:740601-741053:- gene-YBR266C_FaliES1 rna-NM_001395042.1_FaliES1 cds-NP_001381962.1_FaliES1 98.6 100.0 Mismatch 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000067.1:63003-63455:+ gene-YBR266C_JAY291 rna-NM_001395042.1_JAY291 cds-NP_001381962.1_JAY291 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005408.1:727426-727878:- gene-YBR266C_MUCL30387 rna-NM_001395042.1_MUCL30387 cds-NP_001381962.1_MUCL30387 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:744507-744959:- gene-YBR266C_MUCL30388 rna-NM_001395042.1_MUCL30388 cds-NP_001381962.1_MUCL30388 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005280.1:714092-714544:- gene-YBR266C_MUCL39482 rna-NM_001395042.1_MUCL39482 cds-NP_001381962.1_MUCL39482 98.8 100.0 Mismatch 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005424.1:723963-724415:- gene-YBR266C_MUCL42920 rna-NM_001395042.1_MUCL42920 cds-NP_001381962.1_MUCL42920 99.1 100.0 Mismatch 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:739733-740185:- gene-YBR266C_NCIM3186 rna-NM_001395042.1_NCIM3186 cds-NP_001381962.1_NCIM3186 99.1 100.0 Mismatch 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005264.1:715981-716433:- gene-YBR266C_NCYC1407 rna-NM_001395042.1_NCYC1407 cds-NP_001381962.1_NCYC1407 98.8 100.0 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994141.1:739111-739563:- gene-YBR266C_PE2H3 rna-NM_001395042.1_PE2H3 cds-NP_001381962.1_PE2H3 100.0 100.0 Mismatch 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999873.1:736787-737239:- gene-YBR266C_PE2H4 rna-NM_001395042.1_PE2H4 cds-NP_001381962.1_PE2H4 100.0 100.0 Mismatch 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:739936-740388:- gene-YBR266C_S288C rna-NM_001395042.1_S288C cds-NP_001381962.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000019.1:95064-95516:- gene-YBR266C_SA1 rna-NM_001395042.1_SA1 cds-NP_001381962.1_SA1 99.7 100.0 Mismatch 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005488.1:739593-740045:- gene-YBR266C_ThermosaccDry rna-NM_001395042.1_ThermosaccDry cds-NP_001381962.1_ThermosaccDry 98.6 100.0 Mismatch 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:719809-720261:- gene-YBR266C_VR1 rna-NM_001395042.1_VR1 cds-NP_001381962.1_VR1 100.0 100.0 Mismatch 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000003.1:712438-712890:- gene-YBR266C_ZTW1 rna-NM_001395042.1_ZTW1 cds-NP_001381962.1_ZTW1 98.8 100.0 Mismatch 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047488.1:756347-756799:- gene-YBR266C_Sparadoxus rna-NM_001395042.1_Sparadoxus cds-NP_001381962.1_Sparadoxus 88.9 100.0 Mismatch 1 1 0 False False False False True

Additional files