Gene name: SLM5
Reference locus (S288C): YCR024C
Gene biotype: protein_coding
Description: Asparagine--tRNA ligase, mitochondrial; Mitochondrial asparaginyl-tRNA synthetase
Top 10 interactors (score): HER2 (0.982); PET112 (0.979); GLN4 (0.978); HTS1 (0.955); NAM2 (0.951); MSW1 (0.937); AIM10 (0.932); MSE1 (0.905); YCR25C (0.899); ISM1 (0.885); MSY1 (0.879); MSF1 (0.866); YCR023C (0.864); VAS1 (0.859); CDC60 (0.859); GUS1 (0.855); KRS1 (0.849); YIL108W (0.848); ILS1 (0.838); ALA1 (0.835)
Homologues (species, bitscore): NARS2 (Homo sapiens, 298.9); Nars2 (Mus musculus, 318.2); nars2 (Danio rerio, 315.1); nars2 (Xenopus tropicalis, 254.2); CG6796 (Drosophila melanogaster, 249.2); nars-2 (Caenorhabditis elegans, 223.4); NS1 (Arabidopsis thaliana, 283.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:155230-156708:- | gene-YCR024C_AKU4011 | rna-NM_001178738.1_AKU4011 | cds-NP_009953.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:9384-10862:- | gene-YCR024C_BG1 | rna-NM_001178738.1_BG1 | cds-NP_009953.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:150550-152028:- | gene-YCR024C_Bruggeman | rna-NM_001178738.1_Bruggeman | cds-NP_009953.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:162120-163598:- | gene-YCR024C_CAT1 | rna-NM_001178738.1_CAT1 | cds-NP_009953.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:149991-151469:- | gene-YCR024C_CBS1585 | rna-NM_001178738.1_CBS1585 | cds-NP_009953.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:161131-162609:- | gene-YCR024C_CBS436 | rna-NM_001178738.1_CBS436 | cds-NP_009953.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:143844-145322:- | gene-YCR024C_CBS6412 | rna-NM_001178738.1_CBS6412 | cds-NP_009953.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:156168-157646:- | gene-YCR024C_CBS6413 | rna-NM_001178738.1_CBS6413 | cds-NP_009953.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:160227-161705:- | gene-YCR024C_CENPK1137D | rna-NM_001178738.1_CENPK1137D | cds-NP_009953.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:153238-154716:- | gene-YCR024C_EthanolRed | rna-NM_001178738.1_EthanolRed | cds-NP_009953.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:156099-157577:- | gene-YCR024C_FaliES1 | rna-NM_001178738.1_FaliES1 | cds-NP_009953.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000371.1:6196-7674:+ | gene-YCR024C_JAY291 | rna-NM_001178738.1_JAY291 | cds-NP_009953.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:147729-149207:- | gene-YCR024C_MUCL30387 | rna-NM_001178738.1_MUCL30387 | cds-NP_009953.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:147997-149475:- | gene-YCR024C_MUCL30388 | rna-NM_001178738.1_MUCL30388 | cds-NP_009953.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:156315-157793:- | gene-YCR024C_MUCL39482 | rna-NM_001178738.1_MUCL39482 | cds-NP_009953.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:152709-154187:- | gene-YCR024C_MUCL42920 | rna-NM_001178738.1_MUCL42920 | cds-NP_009953.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:160376-161854:- | gene-YCR024C_NCIM3186 | rna-NM_001178738.1_NCIM3186 | cds-NP_009953.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:158079-159557:- | gene-YCR024C_NCYC1407 | rna-NM_001178738.1_NCYC1407 | cds-NP_009953.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:166783-168261:- | gene-YCR024C_PE2H3 | rna-NM_001178738.1_PE2H3 | cds-NP_009953.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:161404-162882:- | gene-YCR024C_PE2H4 | rna-NM_001178738.1_PE2H4 | cds-NP_009953.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:160744-162222:- | gene-YCR024C_S288C | rna-NM_001178738.1_S288C | cds-NP_009953.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000083.1:9274-10752:- | gene-YCR024C_SA1 | rna-NM_001178738.1_SA1 | cds-NP_009953.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:156170-157648:- | gene-YCR024C_ThermosaccDry | rna-NM_001178738.1_ThermosaccDry | cds-NP_009953.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:166935-168413:- | gene-YCR024C_VR1 | rna-NM_001178738.1_VR1 | cds-NP_009953.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:155103-156581:- | gene-YCR024C_ZTW1 | rna-NM_001178738.1_ZTW1 | cds-NP_009953.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:188353-189831:- | gene-YCR024C_Sparadoxus | rna-NM_001178738.1_Sparadoxus | cds-NP_009953.1_Sparadoxus | 88.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |