Gene name: SLM4
Reference locus (S288C): YBR077C
Gene biotype: protein_coding
Description: Protein SLM4; Component of the EGO and GSE complexes; essential for integrity and function of EGO; EGO is involved in the regulation of microautophagy and GSE is required for proper sorting of amino acid permease Gap1p; gene exhibits synthetic genetic interaction with MSS4
Top 10 interactors (score): GTR1 (0.999); GTR2 (0.999); EGO2 (0.999); MEH1 (0.999); TOR1 (0.903); PIB2 (0.863); YGR201C (0.861); LTV1 (0.84); TCO89 (0.813); KOG1 (0.805); MTC5 (0.788); VAM6 (0.779); LST7 (0.754); LST4 (0.747); SCH9 (0.746); RTC1 (0.745); EGO4 (0.744); GAP1 (0.723); SEA4 (0.699); NPR2 (0.697)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:374187-374675:- | gene-YBR077C_AKU4011 | rna-NM_001178425.3_AKU4011 | cds-NP_009633.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:365167-365655:- | gene-YBR077C_BG1 | rna-NM_001178425.3_BG1 | cds-NP_009633.3_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:375424-375912:- | gene-YBR077C_Bruggeman | rna-NM_001178425.3_Bruggeman | cds-NP_009633.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:378717-379205:- | gene-YBR077C_CAT1 | rna-NM_001178425.3_CAT1 | cds-NP_009633.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:366471-366959:- | gene-YBR077C_CBS1585 | rna-NM_001178425.3_CBS1585 | cds-NP_009633.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:374547-375035:- | gene-YBR077C_CBS436 | rna-NM_001178425.3_CBS436 | cds-NP_009633.3_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:464702-465190:- | gene-YBR077C_CBS6412 | rna-NM_001178425.3_CBS6412 | cds-NP_009633.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:371612-372100:- | gene-YBR077C_CBS6413 | rna-NM_001178425.3_CBS6413 | cds-NP_009633.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:385564-386052:- | gene-YBR077C_CENPK1137D | rna-NM_001178425.3_CENPK1137D | cds-NP_009633.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:500974-501462:- | gene-YBR077C_EthanolRed | rna-NM_001178425.3_EthanolRed | cds-NP_009633.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:390257-390745:- | gene-YBR077C_FaliES1 | rna-NM_001178425.3_FaliES1 | cds-NP_009633.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000124.1:38190-38678:- | gene-YBR077C_JAY291 | rna-NM_001178425.3_JAY291 | cds-NP_009633.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:376574-377062:- | gene-YBR077C_MUCL30387 | rna-NM_001178425.3_MUCL30387 | cds-NP_009633.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:376617-377105:- | gene-YBR077C_MUCL30388 | rna-NM_001178425.3_MUCL30388 | cds-NP_009633.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:366463-366951:- | gene-YBR077C_MUCL39482 | rna-NM_001178425.3_MUCL39482 | cds-NP_009633.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:373675-374163:- | gene-YBR077C_MUCL42920 | rna-NM_001178425.3_MUCL42920 | cds-NP_009633.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:391602-392090:- | gene-YBR077C_NCIM3186 | rna-NM_001178425.3_NCIM3186 | cds-NP_009633.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:367396-367884:- | gene-YBR077C_NCYC1407 | rna-NM_001178425.3_NCYC1407 | cds-NP_009633.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:379639-380127:- | gene-YBR077C_PE2H3 | rna-NM_001178425.3_PE2H3 | cds-NP_009633.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:377315-377803:- | gene-YBR077C_PE2H4 | rna-NM_001178425.3_PE2H4 | cds-NP_009633.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:391805-392293:- | gene-YBR077C_S288C | rna-NM_001178425.3_S288C | cds-NP_009633.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:85218-85706:+ | gene-YBR077C_SA1 | rna-NM_001178425.3_SA1 | cds-NP_009633.3_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:389264-389752:- | gene-YBR077C_ThermosaccDry | rna-NM_001178425.3_ThermosaccDry | cds-NP_009633.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:371256-371744:- | gene-YBR077C_VR1 | rna-NM_001178425.3_VR1 | cds-NP_009633.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:364940-365428:- | gene-YBR077C_ZTW1 | rna-NM_001178425.3_ZTW1 | cds-NP_009633.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:401872-402359:- | gene-YBR077C_Sparadoxus | rna-NM_001178425.3_Sparadoxus | cds-NP_009633.3_Sparadoxus | 89.1 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |