Gene name: SLM3
Reference locus (S288C): YDL033C
Gene biotype: protein_coding
Description: TRNA-5-taurinomethyluridine 2-sulfurtransferase; tRNA-specific 2-thiouridylase; responsible for 2-thiolation of the wobble base of mitochondrial tRNAs; human homolog TRMU is implicated in myoclonus epilepsy associated with ragged red fibers (MERRF), and can complement yeast null mutant
Top 10 interactors (score): MTO1 (0.999); MSS1 (0.992); TUM1 (0.97); NCS6 (0.873); NFS1 (0.866); GRC3 (0.808); ISU1 (0.77); COB (0.756); AI5_ALPHA (0.755); PUS1 (0.747); MOD5 (0.724); KRE29 (0.72); COF1 (0.719); MSS18 (0.716); ATP6 (0.716); LTP1 (0.713); KAE1 (0.699); RIB2 (0.697); PFK1 (0.69); AIM25 (0.685)
Homologues (species, bitscore): TRMU (Homo sapiens, 172.6); Trmu (Mus musculus, 172.6); trmu (Danio rerio, 176.4); trmu (Xenopus tropicalis, 189.1); CG3021 (Drosophila melanogaster, 189.9); B0035.16 (Caenorhabditis elegans, 160.2); AT1G51310 (Arabidopsis thaliana, 157.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:378736-379989:- | gene-YDL033C_AKU4011 | rna-NM_001180092.1_AKU4011 | cds-NP_010251.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:169881-171134:+ | gene-YDL033C_BG1 | rna-NM_001180092.1_BG1 | cds-NP_010251.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:397401-398654:- | gene-YDL033C_Bruggeman | rna-NM_001180092.1_Bruggeman | cds-NP_010251.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:391943-393196:- | gene-YDL033C_CAT1 | rna-NM_001180092.1_CAT1 | cds-NP_010251.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:375151-376404:- | gene-YDL033C_CBS1585 | rna-NM_001180092.1_CBS1585 | cds-NP_010251.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:392682-393935:- | gene-YDL033C_CBS436 | rna-NM_001180092.1_CBS436 | cds-NP_010251.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:372941-374194:- | gene-YDL033C_CBS6412 | rna-NM_001180092.1_CBS6412 | cds-NP_010251.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:394913-396166:- | gene-YDL033C_CBS6413 | rna-NM_001180092.1_CBS6413 | cds-NP_010251.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:391518-392771:- | gene-YDL033C_CENPK1137D | rna-NM_001180092.1_CENPK1137D | cds-NP_010251.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:387566-388819:- | gene-YDL033C_EthanolRed | rna-NM_001180092.1_EthanolRed | cds-NP_010251.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:393758-395011:- | gene-YDL033C_FaliES1 | rna-NM_001180092.1_FaliES1 | cds-NP_010251.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000370.1:8301-9554:- | gene-YDL033C_JAY291 | rna-NM_001180092.1_JAY291 | cds-NP_010251.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:393132-394385:- | gene-YDL033C_MUCL30387 | rna-NM_001180092.1_MUCL30387 | cds-NP_010251.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:383646-384899:- | gene-YDL033C_MUCL30388 | rna-NM_001180092.1_MUCL30388 | cds-NP_010251.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:376329-377582:- | gene-YDL033C_MUCL39482 | rna-NM_001180092.1_MUCL39482 | cds-NP_010251.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:298692-299945:- | gene-YDL033C_MUCL42920 | rna-NM_001180092.1_MUCL42920 | cds-NP_010251.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:392582-393835:- | gene-YDL033C_NCIM3186 | rna-NM_001180092.1_NCIM3186 | cds-NP_010251.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:376244-377497:- | gene-YDL033C_NCYC1407 | rna-NM_001180092.1_NCYC1407 | cds-NP_010251.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:383782-385035:- | gene-YDL033C_PE2H3 | rna-NM_001180092.1_PE2H3 | cds-NP_010251.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:383140-384393:- | gene-YDL033C_PE2H4 | rna-NM_001180092.1_PE2H4 | cds-NP_010251.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:392659-393912:- | gene-YDL033C_S288C | rna-NM_001180092.1_S288C | cds-NP_010251.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:41026-42279:+ | gene-YDL033C_SA1 | rna-NM_001180092.1_SA1 | cds-NP_010251.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:393216-394469:- | gene-YDL033C_ThermosaccDry | rna-NM_001180092.1_ThermosaccDry | cds-NP_010251.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:396276-397529:- | gene-YDL033C_VR1 | rna-NM_001180092.1_VR1 | cds-NP_010251.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:391118-392371:- | gene-YDL033C_ZTW1 | rna-NM_001180092.1_ZTW1 | cds-NP_010251.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:395340-396593:- | gene-YDL033C_Sparadoxus | rna-NM_001180092.1_Sparadoxus | cds-NP_010251.1_Sparadoxus | 88.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |