Gene name: SLM2
Reference locus (S288C): YNL047C
Gene biotype: protein_coding
Description: Phosphatidylinositol 4,5-bisphosphate-binding protein SLM2; Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; TORC2 complex substrate and effector; SLM2 has a paralog, SLM1, that arose from the whole genome duplication
Top 10 interactors (score): SLM1 (0.999); BIT61 (0.849); TSC11 (0.802); AVO2 (0.799); AVO1 (0.757); KTR4 (0.746); RMA1 (0.744); CAB5 (0.713); YML082W (0.713); GPI8 (0.712); CAB4 (0.711); CAB2 (0.71); KTR5 (0.697); SOL2 (0.696); BIT2 (0.694); PIB1 (0.694); PRM15 (0.676); TOR2 (0.671); YHM2 (0.671); GUP2 (0.652)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:527711-529681:- | gene-YNL047C_AKU4011 | rna-NM_001182886.3_AKU4011 | cds-NP_014351.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:431671-433641:- | gene-YNL047C_BG1 | rna-NM_001182886.3_BG1 | cds-NP_014351.3_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:544821-546791:- | gene-YNL047C_Bruggeman | rna-NM_001182886.3_Bruggeman | cds-NP_014351.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:581383-583353:- | gene-YNL047C_CAT1 | rna-NM_001182886.3_CAT1 | cds-NP_014351.3_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:528382-530352:- | gene-YNL047C_CBS1585 | rna-NM_001182886.3_CBS1585 | cds-NP_014351.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:596631-598601:- | gene-YNL047C_CBS436 | rna-NM_001182886.3_CBS436 | cds-NP_014351.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:523474-525444:- | gene-YNL047C_CBS6412 | rna-NM_001182886.3_CBS6412 | cds-NP_014351.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:524792-526762:- | gene-YNL047C_CBS6413 | rna-NM_001182886.3_CBS6413 | cds-NP_014351.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:533498-535468:- | gene-YNL047C_CENPK1137D | rna-NM_001182886.3_CENPK1137D | cds-NP_014351.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:530534-532504:- | gene-YNL047C_EthanolRed | rna-NM_001182886.3_EthanolRed | cds-NP_014351.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:521059-523029:- | gene-YNL047C_FaliES1 | rna-NM_001182886.3_FaliES1 | cds-NP_014351.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:36101-38071:- | gene-YNL047C_JAY291 | rna-NM_001182886.3_JAY291 | cds-NP_014351.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:541155-543125:- | gene-YNL047C_MUCL30387 | rna-NM_001182886.3_MUCL30387 | cds-NP_014351.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:570575-572545:- | gene-YNL047C_MUCL30388 | rna-NM_001182886.3_MUCL30388 | cds-NP_014351.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:525798-527768:- | gene-YNL047C_MUCL39482 | rna-NM_001182886.3_MUCL39482 | cds-NP_014351.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:529870-531840:- | gene-YNL047C_MUCL42920 | rna-NM_001182886.3_MUCL42920 | cds-NP_014351.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:539880-541850:- | gene-YNL047C_NCIM3186 | rna-NM_001182886.3_NCIM3186 | cds-NP_014351.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:527850-529820:- | gene-YNL047C_NCYC1407 | rna-NM_001182886.3_NCYC1407 | cds-NP_014351.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:531018-532988:- | gene-YNL047C_PE2H3 | rna-NM_001182886.3_PE2H3 | cds-NP_014351.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:526093-528063:- | gene-YNL047C_PE2H4 | rna-NM_001182886.3_PE2H4 | cds-NP_014351.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:539911-541881:- | gene-YNL047C_S288C | rna-NM_001182886.3_S288C | cds-NP_014351.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:118943-120913:- | gene-YNL047C_SA1 | rna-NM_001182886.3_SA1 | cds-NP_014351.3_SA1 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:521934-523904:- | gene-YNL047C_ThermosaccDry | rna-NM_001182886.3_ThermosaccDry | cds-NP_014351.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:540979-542949:- | gene-YNL047C_VR1 | rna-NM_001182886.3_VR1 | cds-NP_014351.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:431255-433225:- | gene-YNL047C_ZTW1 | rna-NM_001182886.3_ZTW1 | cds-NP_014351.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:537177-539150:- | gene-YNL047C_Sparadoxus | rna-NM_001182886.3_Sparadoxus | cds-NP_014351.3_Sparadoxus | 88.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |