Gene name: SLH1
Reference locus (S288C): YGR271W
Gene biotype: protein_coding
Description: Antiviral helicase SLH1; Putative RNA helicase related to Ski2p; involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses; Belongs to the helicase family. SKI2 subfamily
Top 10 interactors (score): YKR023W (0.997); HEL2 (0.951); RQC2 (0.94); CUE3 (0.923); GGA1 (0.903); RBG2 (0.894); PRP8 (0.892); LRG1 (0.886); VMS1 (0.884); TMA46 (0.802); GCN1 (0.783); DHR2 (0.78); CUE2 (0.771); GIR2 (0.748); SKI2 (0.748); RPS20 (0.746); PRP6 (0.742); CBF5 (0.733); PUF3 (0.707); RPS10B (0.702)
Homologues (species, bitscore): ASCC3 (Homo sapiens, 1547.7); Ascc3 (Mus musculus, 1553.1); snrnp200 (Danio rerio, 1287.7); snrnp200 (Xenopus tropicalis, 1293.5); CG5205 (Drosophila melanogaster, 1520.0); Y54E2A.4 (Caenorhabditis elegans, 1392.1); AT5G61140 (Arabidopsis thaliana, 1573.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:997218-1003121:+ | gene-YGR271W_AKU4011 | rna-NM_001181400.4_AKU4011 | cds-NP_011787.4_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:277226-283129:+ | gene-YGR271W_BG1 | rna-NM_001181400.4_BG1 | cds-NP_011787.4_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:1005741-1011644:+ | gene-YGR271W_Bruggeman | rna-NM_001181400.4_Bruggeman | cds-NP_011787.4_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:1005177-1011080:+ | gene-YGR271W_CAT1 | rna-NM_001181400.4_CAT1 | cds-NP_011787.4_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:1000088-1005991:+ | gene-YGR271W_CBS1585 | rna-NM_001181400.4_CBS1585 | cds-NP_011787.4_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:1003718-1009621:+ | gene-YGR271W_CBS436 | rna-NM_001181400.4_CBS436 | cds-NP_011787.4_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:990978-996881:+ | gene-YGR271W_CBS6412 | rna-NM_001181400.4_CBS6412 | cds-NP_011787.4_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:997033-1002936:+ | gene-YGR271W_CBS6413 | rna-NM_001181400.4_CBS6413 | cds-NP_011787.4_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1031461-1037364:+ | gene-YGR271W_CENPK1137D | rna-NM_001181400.4_CENPK1137D | cds-NP_011787.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:985067-990970:+ | gene-YGR271W_EthanolRed | rna-NM_001181400.4_EthanolRed | cds-NP_011787.4_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:989873-995776:+ | gene-YGR271W_FaliES1 | rna-NM_001181400.4_FaliES1 | cds-NP_011787.4_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:34535-40438:- | gene-YGR271W_JAY291 | rna-NM_001181400.4_JAY291 | cds-NP_011787.4_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:1003482-1009385:+ | gene-YGR271W_MUCL30387 | rna-NM_001181400.4_MUCL30387 | cds-NP_011787.4_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:1001614-1007517:+ | gene-YGR271W_MUCL30388 | rna-NM_001181400.4_MUCL30388 | cds-NP_011787.4_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:995194-1001097:+ | gene-YGR271W_MUCL39482 | rna-NM_001181400.4_MUCL39482 | cds-NP_011787.4_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:1013067-1018970:+ | gene-YGR271W_MUCL42920 | rna-NM_001181400.4_MUCL42920 | cds-NP_011787.4_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1031791-1037694:+ | gene-YGR271W_NCIM3186 | rna-NM_001181400.4_NCIM3186 | cds-NP_011787.4_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:990823-996726:+ | gene-YGR271W_NCYC1407 | rna-NM_001181400.4_NCYC1407 | cds-NP_011787.4_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:1016018-1021921:+ | gene-YGR271W_PE2H3 | rna-NM_001181400.4_PE2H3 | cds-NP_011787.4_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1020857-1026760:+ | gene-YGR271W_PE2H4 | rna-NM_001181400.4_PE2H4 | cds-NP_011787.4_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1031791-1037694:+ | gene-YGR271W_S288C | rna-NM_001181400.4_S288C | cds-NP_011787.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:30009-35912:+ | gene-YGR271W_SA1 | rna-NM_001181400.4_SA1 | cds-NP_011787.4_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:1010393-1016296:+ | gene-YGR271W_ThermosaccDry | rna-NM_001181400.4_ThermosaccDry | cds-NP_011787.4_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1116178-1122081:+ | gene-YGR271W_VR1 | rna-NM_001181400.4_VR1 | cds-NP_011787.4_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:311804-317707:+ | gene-YGR271W_ZTW1 | rna-NM_001181400.4_ZTW1 | cds-NP_011787.4_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:1002474-1008377:+ | gene-YGR271W_Sparadoxus | rna-NM_001181400.4_Sparadoxus | cds-NP_011787.4_Sparadoxus | 90.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |