Gene name: SLF1
Reference locus (S288C): YDR515W
Gene biotype: protein_coding
Description: RNA binding protein that associates with polysomes; may be involved in regulating mRNA translation; involved in the copper-dependent mineralization of copper sulfide complexes on cell surface in cells cultured in copper salts; SLF1 has a paralog, SRO9, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): CDC33 (0.958); PAB1 (0.952); SRO9 (0.936); CAF20 (0.871); PUF3 (0.846); LHP1 (0.773); YNL146W (0.748); SBP1 (0.746); KOG1 (0.686); TIF4631 (0.662); YOR248W (0.655); DAP1 (0.627); MIP6 (0.605); PES4 (0.605); TIF4632 (0.594); DHH1 (0.588); NOP1 (0.58); EAP1 (0.569); ASC1 (0.565); BCP1 (0.564)
Homologues (species, bitscore): LARP1 (Homo sapiens, 56.6); Larp1 (Mus musculus, 58.5); larp1 (Danio rerio, 55.8); larp1b (Xenopus tropicalis, 58.2); larp (Drosophila melanogaster, 57.4); larp-1 (Caenorhabditis elegans, 56.2); LARP6a (Arabidopsis thaliana, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1413439-1414782:+ | gene-YDR515W_AKU4011 | rna-NM_001180823.3_AKU4011 | cds-NP_010803.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:55094-56437:+ | gene-YDR515W_BG1 | rna-NM_001180823.3_BG1 | cds-NP_010803.3_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1444754-1446097:+ | gene-YDR515W_Bruggeman | rna-NM_001180823.3_Bruggeman | cds-NP_010803.3_Bruggeman | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1421936-1423279:+ | gene-YDR515W_CAT1 | rna-NM_001180823.3_CAT1 | cds-NP_010803.3_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1408174-1409517:+ | gene-YDR515W_CBS1585 | rna-NM_001180823.3_CBS1585 | cds-NP_010803.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1427409-1428752:+ | gene-YDR515W_CBS436 | rna-NM_001180823.3_CBS436 | cds-NP_010803.3_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1403324-1404667:+ | gene-YDR515W_CBS6412 | rna-NM_001180823.3_CBS6412 | cds-NP_010803.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1426828-1428171:+ | gene-YDR515W_CBS6413 | rna-NM_001180823.3_CBS6413 | cds-NP_010803.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1472120-1473463:+ | gene-YDR515W_CENPK1137D | rna-NM_001180823.3_CENPK1137D | cds-NP_010803.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1416705-1418048:+ | gene-YDR515W_EthanolRed | rna-NM_001180823.3_EthanolRed | cds-NP_010803.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1420257-1421600:+ | gene-YDR515W_FaliES1 | rna-NM_001180823.3_FaliES1 | cds-NP_010803.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:118637-119980:+ | gene-YDR515W_JAY291 | rna-NM_001180823.3_JAY291 | cds-NP_010803.3_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1427852-1429195:+ | gene-YDR515W_MUCL30387 | rna-NM_001180823.3_MUCL30387 | cds-NP_010803.3_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1409278-1410621:+ | gene-YDR515W_MUCL30388 | rna-NM_001180823.3_MUCL30388 | cds-NP_010803.3_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1399663-1401006:+ | gene-YDR515W_MUCL39482 | rna-NM_001180823.3_MUCL39482 | cds-NP_010803.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1342331-1343674:+ | gene-YDR515W_MUCL42920 | rna-NM_001180823.3_MUCL42920 | cds-NP_010803.3_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1473352-1474695:+ | gene-YDR515W_NCIM3186 | rna-NM_001180823.3_NCIM3186 | cds-NP_010803.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1412953-1414296:+ | gene-YDR515W_NCYC1407 | rna-NM_001180823.3_NCYC1407 | cds-NP_010803.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1423904-1425247:+ | gene-YDR515W_PE2H3 | rna-NM_001180823.3_PE2H3 | cds-NP_010803.3_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1429372-1430715:+ | gene-YDR515W_PE2H4 | rna-NM_001180823.3_PE2H4 | cds-NP_010803.3_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1473429-1474772:+ | gene-YDR515W_S288C | rna-NM_001180823.3_S288C | cds-NP_010803.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:142341-143684:- | gene-YDR515W_SA1 | rna-NM_001180823.3_SA1 | cds-NP_010803.3_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1424479-1425822:+ | gene-YDR515W_ThermosaccDry | rna-NM_001180823.3_ThermosaccDry | cds-NP_010803.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1440275-1441618:+ | gene-YDR515W_VR1 | rna-NM_001180823.3_VR1 | cds-NP_010803.3_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:467145-468488:+ | gene-YDR515W_ZTW1 | rna-NM_001180823.3_ZTW1 | cds-NP_010803.3_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1433417-1434769:+ | gene-YDR515W_Sparadoxus | rna-NM_001180823.3_Sparadoxus | cds-NP_010803.3_Sparadoxus | 86.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |