Gene name: SLD5
Reference locus (S288C): YDR489W
Gene biotype: protein_coding
Description: Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; Belongs to the GINS4/SLD5 family
Top 10 interactors (score): CSM3 (0.999); MCM4 (0.999); MCM10 (0.999); CTF4 (0.999); PSF3 (0.999); MCM5 (0.999); PSF1 (0.999); PSF2 (0.999); MCM3 (0.999); MCM6 (0.999); MCM2 (0.999); CDC45 (0.999); MCM7 (0.999); TOF1 (0.998); DPB11 (0.997); DPB2 (0.996); POL2 (0.996); CDC6 (0.995); POB3 (0.994); POL1 (0.994)
Homologues (species, bitscore): GINS4 (Homo sapiens, 59.3); Gins4 (Mus musculus, 63.9); gins4 (Danio rerio, 64.7); gins4 (Xenopus tropicalis, 59.7); Sld5 (Drosophila melanogaster, 65.9); sld-5 (Caenorhabditis elegans, 63.2); SLD5 (Arabidopsis thaliana, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1370939-1371823:+ | gene-YDR489W_AKU4011 | rna-NM_001180797.3_AKU4011 | cds-NP_010777.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:12541-13425:+ | gene-YDR489W_BG1 | rna-NM_001180797.3_BG1 | cds-NP_010777.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1402343-1403227:+ | gene-YDR489W_Bruggeman | rna-NM_001180797.3_Bruggeman | cds-NP_010777.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1379487-1380371:+ | gene-YDR489W_CAT1 | rna-NM_001180797.3_CAT1 | cds-NP_010777.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1365238-1366122:+ | gene-YDR489W_CBS1585 | rna-NM_001180797.3_CBS1585 | cds-NP_010777.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1384588-1385472:+ | gene-YDR489W_CBS436 | rna-NM_001180797.3_CBS436 | cds-NP_010777.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1360862-1361746:+ | gene-YDR489W_CBS6412 | rna-NM_001180797.3_CBS6412 | cds-NP_010777.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1383873-1384757:+ | gene-YDR489W_CBS6413 | rna-NM_001180797.3_CBS6413 | cds-NP_010777.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1429708-1430592:+ | gene-YDR489W_CENPK1137D | rna-NM_001180797.3_CENPK1137D | cds-NP_010777.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1374278-1375162:+ | gene-YDR489W_EthanolRed | rna-NM_001180797.3_EthanolRed | cds-NP_010777.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1377831-1378715:+ | gene-YDR489W_FaliES1 | rna-NM_001180797.3_FaliES1 | cds-NP_010777.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:76076-76960:+ | gene-YDR489W_JAY291 | rna-NM_001180797.3_JAY291 | cds-NP_010777.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1384829-1385713:+ | gene-YDR489W_MUCL30387 | rna-NM_001180797.3_MUCL30387 | cds-NP_010777.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1366861-1367745:+ | gene-YDR489W_MUCL30388 | rna-NM_001180797.3_MUCL30388 | cds-NP_010777.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1356723-1357607:+ | gene-YDR489W_MUCL39482 | rna-NM_001180797.3_MUCL39482 | cds-NP_010777.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1299504-1300388:+ | gene-YDR489W_MUCL42920 | rna-NM_001180797.3_MUCL42920 | cds-NP_010777.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1430935-1431819:+ | gene-YDR489W_NCIM3186 | rna-NM_001180797.3_NCIM3186 | cds-NP_010777.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1370492-1371376:+ | gene-YDR489W_NCYC1407 | rna-NM_001180797.3_NCYC1407 | cds-NP_010777.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1381343-1382227:+ | gene-YDR489W_PE2H3 | rna-NM_001180797.3_PE2H3 | cds-NP_010777.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1386917-1387801:+ | gene-YDR489W_PE2H4 | rna-NM_001180797.3_PE2H4 | cds-NP_010777.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1431012-1431896:+ | gene-YDR489W_S288C | rna-NM_001180797.3_S288C | cds-NP_010777.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:185253-186137:- | gene-YDR489W_SA1 | rna-NM_001180797.3_SA1 | cds-NP_010777.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1382053-1382937:+ | gene-YDR489W_ThermosaccDry | rna-NM_001180797.3_ThermosaccDry | cds-NP_010777.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1397788-1398672:+ | gene-YDR489W_VR1 | rna-NM_001180797.3_VR1 | cds-NP_010777.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:424720-425604:+ | gene-YDR489W_ZTW1 | rna-NM_001180797.3_ZTW1 | cds-NP_010777.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1384858-1385742:+ | gene-YDR489W_Sparadoxus | rna-NM_001180797.3_Sparadoxus | cds-NP_010777.3_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |