Gene name: SLD3
Reference locus (S288C): YGL113W
Gene biotype: protein_coding
Description: Protein involved in the initiation of DNA replication; required for proper assembly of replication proteins at the origins of replication; interacts with Cdc45p; localizes to nuclear foci that become diffuse upon DNA replication stress; homologous to the human Treslin/Ticrr protein
Top 10 interactors (score): CDC45 (0.999); DPB11 (0.999); PSF1 (0.993); MCM2 (0.99); SLD2 (0.99); SLD7 (0.988); SLD5 (0.984); PSF2 (0.98); MCM4 (0.98); PSF3 (0.976); DBF4 (0.974); MCM6 (0.967); MCM5 (0.948); CDC6 (0.944); MCM3 (0.942); MCM7 (0.938); DPB2 (0.916); ORC6 (0.9); RAD53 (0.894); ORC2 (0.853)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:299263-301269:+ | gene-YGL113W_AKU4011 | rna-NM_001180978.3_AKU4011 | cds-NP_011402.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:104477-106483:- | gene-YGL113W_BG1 | rna-NM_001180978.3_BG1 | cds-NP_011402.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:301421-303427:+ | gene-YGL113W_Bruggeman | rna-NM_001180978.3_Bruggeman | cds-NP_011402.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:296943-298949:+ | gene-YGL113W_CAT1 | rna-NM_001180978.3_CAT1 | cds-NP_011402.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:302588-304594:+ | gene-YGL113W_CBS1585 | rna-NM_001180978.3_CBS1585 | cds-NP_011402.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:296892-298898:+ | gene-YGL113W_CBS436 | rna-NM_001180978.3_CBS436 | cds-NP_011402.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:287281-289287:+ | gene-YGL113W_CBS6412 | rna-NM_001180978.3_CBS6412 | cds-NP_011402.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:296880-298886:+ | gene-YGL113W_CBS6413 | rna-NM_001180978.3_CBS6413 | cds-NP_011402.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:296119-298125:+ | gene-YGL113W_CENPK1137D | rna-NM_001180978.3_CENPK1137D | cds-NP_011402.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:288330-290336:+ | gene-YGL113W_EthanolRed | rna-NM_001180978.3_EthanolRed | cds-NP_011402.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:290885-292891:+ | gene-YGL113W_FaliES1 | rna-NM_001180978.3_FaliES1 | cds-NP_011402.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:9249-11255:- | gene-YGL113W_JAY291 | rna-NM_001180978.3_JAY291 | cds-NP_011402.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:298391-300397:+ | gene-YGL113W_MUCL30387 | rna-NM_001180978.3_MUCL30387 | cds-NP_011402.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:301483-303489:+ | gene-YGL113W_MUCL30388 | rna-NM_001180978.3_MUCL30388 | cds-NP_011402.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:299101-301107:+ | gene-YGL113W_MUCL39482 | rna-NM_001180978.3_MUCL39482 | cds-NP_011402.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:302381-304387:+ | gene-YGL113W_MUCL42920 | rna-NM_001180978.3_MUCL42920 | cds-NP_011402.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:295932-297938:+ | gene-YGL113W_NCIM3186 | rna-NM_001180978.3_NCIM3186 | cds-NP_011402.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:290591-292597:+ | gene-YGL113W_NCYC1407 | rna-NM_001180978.3_NCYC1407 | cds-NP_011402.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:291976-293982:+ | gene-YGL113W_PE2H3 | rna-NM_001180978.3_PE2H3 | cds-NP_011402.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:296974-298980:+ | gene-YGL113W_PE2H4 | rna-NM_001180978.3_PE2H4 | cds-NP_011402.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:295932-297938:+ | gene-YGL113W_S288C | rna-NM_001180978.3_S288C | cds-NP_011402.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:40724-42730:+ | gene-YGL113W_SA1 | rna-NM_001180978.3_SA1 | cds-NP_011402.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:291097-293103:+ | gene-YGL113W_ThermosaccDry | rna-NM_001180978.3_ThermosaccDry | cds-NP_011402.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:400699-402705:+ | gene-YGL113W_VR1 | rna-NM_001180978.3_VR1 | cds-NP_011402.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:288499-290505:+ | gene-YGL113W_ZTW1 | rna-NM_001180978.3_ZTW1 | cds-NP_011402.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:294910-296928:+ | gene-YGL113W_Sparadoxus | rna-NM_001180978.3_Sparadoxus | cds-NP_011402.3_Sparadoxus | 87.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |