Gene name: SLC1
Reference locus (S288C): YDL052C
Gene biotype: protein_coding
Description: 1-acyl-sn-glycerol-3-phosphate acyltransferase; catalyzes the acylation of lysophosphatidic acid to form phosphatidic acid, a key intermediate in lipid metabolism; enzymatic activity detected in lipid particles and microsomes
Top 10 interactors (score): ALE1 (0.996); PAH1 (0.989); SCT1 (0.975); GPT2 (0.97); LPP1 (0.965); CDS1 (0.964); DPP1 (0.962); YDR018C (0.943); LOA1 (0.932); AYR1 (0.926); SPO14 (0.924); YDR250C (0.905); DGA1 (0.902); TAZ1 (0.902); DGK1 (0.9); PHM8 (0.9); CST26 (0.897); YGR045C (0.896); YGR125W (0.863); FAT1 (0.851)
Homologues (species, bitscore): AGPAT1 (Homo sapiens, 142.9); Agpat1 (Mus musculus, 140.2); agpat2 (Danio rerio, 137.1); agpat1 (Xenopus tropicalis, 143.3); CG3812 (Drosophila melanogaster, 152.9); acl-2 (Caenorhabditis elegans, 136.3); ATS2 (Arabidopsis thaliana, 82.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:347240-348151:- | gene-YDL052C_AKU4011 | rna-NM_001180111.1_AKU4011 | cds-NP_010231.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:201521-202432:+ | gene-YDL052C_BG1 | rna-NM_001180111.1_BG1 | cds-NP_010231.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:365061-365972:- | gene-YDL052C_Bruggeman | rna-NM_001180111.1_Bruggeman | cds-NP_010231.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:362005-362916:- | gene-YDL052C_CAT1 | rna-NM_001180111.1_CAT1 | cds-NP_010231.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:345520-346431:- | gene-YDL052C_CBS1585 | rna-NM_001180111.1_CBS1585 | cds-NP_010231.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:362225-363136:- | gene-YDL052C_CBS436 | rna-NM_001180111.1_CBS436 | cds-NP_010231.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:343588-344499:- | gene-YDL052C_CBS6412 | rna-NM_001180111.1_CBS6412 | cds-NP_010231.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:363614-364525:- | gene-YDL052C_CBS6413 | rna-NM_001180111.1_CBS6413 | cds-NP_010231.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:361488-362399:- | gene-YDL052C_CENPK1137D | rna-NM_001180111.1_CENPK1137D | cds-NP_010231.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:358073-358984:- | gene-YDL052C_EthanolRed | rna-NM_001180111.1_EthanolRed | cds-NP_010231.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:364320-365231:- | gene-YDL052C_FaliES1 | rna-NM_001180111.1_FaliES1 | cds-NP_010231.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000378.1:5728-6639:+ | gene-YDL052C_JAY291 | rna-NM_001180111.1_JAY291 | cds-NP_010231.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:362450-363361:- | gene-YDL052C_MUCL30387 | rna-NM_001180111.1_MUCL30387 | cds-NP_010231.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:353577-354488:- | gene-YDL052C_MUCL30388 | rna-NM_001180111.1_MUCL30388 | cds-NP_010231.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:346637-347548:- | gene-YDL052C_MUCL39482 | rna-NM_001180111.1_MUCL39482 | cds-NP_010231.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:268643-269554:- | gene-YDL052C_MUCL42920 | rna-NM_001180111.1_MUCL42920 | cds-NP_010231.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:362595-363506:- | gene-YDL052C_NCIM3186 | rna-NM_001180111.1_NCIM3186 | cds-NP_010231.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:346626-347537:- | gene-YDL052C_NCYC1407 | rna-NM_001180111.1_NCYC1407 | cds-NP_010231.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:353799-354710:- | gene-YDL052C_PE2H3 | rna-NM_001180111.1_PE2H3 | cds-NP_010231.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:353799-354710:- | gene-YDL052C_PE2H4 | rna-NM_001180111.1_PE2H4 | cds-NP_010231.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:362672-363583:- | gene-YDL052C_S288C | rna-NM_001180111.1_S288C | cds-NP_010231.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:71351-72262:+ | gene-YDL052C_SA1 | rna-NM_001180111.1_SA1 | cds-NP_010231.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:363772-364683:- | gene-YDL052C_ThermosaccDry | rna-NM_001180111.1_ThermosaccDry | cds-NP_010231.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:366688-367599:- | gene-YDL052C_VR1 | rna-NM_001180111.1_VR1 | cds-NP_010231.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:361702-362613:- | gene-YDL052C_ZTW1 | rna-NM_001180111.1_ZTW1 | cds-NP_010231.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:364148-365059:- | gene-YDL052C_Sparadoxus | rna-NM_001180111.1_Sparadoxus | cds-NP_010231.1_Sparadoxus | 93.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |