Gene name: SLA1
Reference locus (S288C): YBL007C
Gene biotype: protein_coding
Description: Actin cytoskeleton-regulatory complex protein SLA1; Cytoskeletal protein binding protein; required for assembly of the cortical actin cytoskeleton; interacts with proteins regulating actin dynamics and proteins required for endocytosis; found in the nucleus and cell cortex; has 3 SH3 domains; Belongs to the SLA1 family
Top 10 interactors (score): LAS17 (0.997); END3 (0.995); SLA2 (0.995); LSB3 (0.991); ABP1 (0.99); YSC84 (0.988); BSP1 (0.977); RVS167 (0.977); PRK1 (0.972); VRP1 (0.966); EDE1 (0.96); UBI4 (0.951); ARK1 (0.947); LSB5 (0.944); BZZ1 (0.944); RVS161 (0.939); INP52 (0.938); SUP35 (0.923); ACT1 (0.92); SAC6 (0.916)
Homologues (species, bitscore): SH3RF3 (Homo sapiens, 53.5); Itsn1 (Mus musculus, 51.6); pacsin1b (Danio rerio, 52.4); stam2 (Xenopus tropicalis, 53.5); dock (Drosophila melanogaster, 52.4); nck-1 (Caenorhabditis elegans, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:206737-210426:- | gene-YBL007C_AKU4011 | rna-NM_001178247.1_AKU4011 | cds-NP_009546.1_AKU4011 | 98.5 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:197058-200792:- | gene-YBL007C_BG1 | rna-NM_001178247.1_BG1 | cds-NP_009546.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:207395-211129:- | gene-YBL007C_Bruggeman | rna-NM_001178247.1_Bruggeman | cds-NP_009546.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:209922-213662:- | gene-YBL007C_CAT1 | rna-NM_001178247.1_CAT1 | cds-NP_009546.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:199025-202714:- | gene-YBL007C_CBS1585 | rna-NM_001178247.1_CBS1585 | cds-NP_009546.1_CBS1585 | 98.5 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:207230-210964:- | gene-YBL007C_CBS436 | rna-NM_001178247.1_CBS436 | cds-NP_009546.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:297525-301214:- | gene-YBL007C_CBS6412 | rna-NM_001178247.1_CBS6412 | cds-NP_009546.1_CBS6412 | 98.5 | 98.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:204345-208079:- | gene-YBL007C_CBS6413 | rna-NM_001178247.1_CBS6413 | cds-NP_009546.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:206398-210132:- | gene-YBL007C_CENPK1137D | rna-NM_001178247.1_CENPK1137D | cds-NP_009546.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:333967-337671:- | gene-YBL007C_EthanolRed | rna-NM_001178247.1_EthanolRed | cds-NP_009546.1_EthanolRed | 98.2 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:221568-225272:- | gene-YBL007C_FaliES1 | rna-NM_001178247.1_FaliES1 | cds-NP_009546.1_FaliES1 | 98.2 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:71819-75553:+ | gene-YBL007C_JAY291 | rna-NM_001178247.1_JAY291 | cds-NP_009546.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:207993-211727:- | gene-YBL007C_MUCL30387 | rna-NM_001178247.1_MUCL30387 | cds-NP_009546.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:207978-211667:- | gene-YBL007C_MUCL30388 | rna-NM_001178247.1_MUCL30388 | cds-NP_009546.1_MUCL30388 | 98.3 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:198961-202695:- | gene-YBL007C_MUCL39482 | rna-NM_001178247.1_MUCL39482 | cds-NP_009546.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:206402-210136:- | gene-YBL007C_MUCL42920 | rna-NM_001178247.1_MUCL42920 | cds-NP_009546.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:212429-216163:- | gene-YBL007C_NCIM3186 | rna-NM_001178247.1_NCIM3186 | cds-NP_009546.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:200136-203870:- | gene-YBL007C_NCYC1407 | rna-NM_001178247.1_NCYC1407 | cds-NP_009546.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:212305-216039:- | gene-YBL007C_PE2H3 | rna-NM_001178247.1_PE2H3 | cds-NP_009546.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:209949-213689:- | gene-YBL007C_PE2H4 | rna-NM_001178247.1_PE2H4 | cds-NP_009546.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:212632-216366:- | gene-YBL007C_S288C | rna-NM_001178247.1_S288C | cds-NP_009546.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:80491-84231:+ | gene-YBL007C_SA1 | rna-NM_001178247.1_SA1 | cds-NP_009546.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:221523-225227:- | gene-YBL007C_ThermosaccDry | rna-NM_001178247.1_ThermosaccDry | cds-NP_009546.1_ThermosaccDry | 98.2 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:203645-207379:- | gene-YBL007C_VR1 | rna-NM_001178247.1_VR1 | cds-NP_009546.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:197727-201461:- | gene-YBL007C_ZTW1 | rna-NM_001178247.1_ZTW1 | cds-NP_009546.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:233300-237025:- | gene-YBL007C_Sparadoxus | rna-NM_001178247.1_Sparadoxus | cds-NP_009546.1_Sparadoxus | 87.8 | 97.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |