Gene name: SKT5
Reference locus (S288C): YBL061C
Gene biotype: protein_coding
Description: Protein SKT5; Activator of Chs3p (chitin synthase III) during vegetative growth; recruits Chs3p to the bud neck via interaction with Bni4p; SKT5 has a paralog, SHC1, that arose from the whole genome duplication
Top 10 interactors (score): CHS3 (0.998); BNI4 (0.979); CHS7 (0.92); CHS5 (0.905); CHS6 (0.877); FKS1 (0.851); CHS2 (0.843); GAS1 (0.815); BCK1 (0.814); CHS1 (0.814); SMI1 (0.768); GIN4 (0.76); YOS9 (0.693); KRE5 (0.672); CCW12 (0.667); YBL062W (0.656); CDC10 (0.635); BUD3 (0.615); NAS2 (0.611); BUD4 (0.599)
Homologues (species, bitscore): SEL1L2 (Homo sapiens, 64.7); Sel1l2 (Mus musculus, 65.5); sel1l (Danio rerio, 62.0); sel1l (Xenopus tropicalis, 57.4); Hrd3 (Drosophila melanogaster, 57.8); sel-1 (Caenorhabditis elegans, 71.6); EBS5 (Arabidopsis thaliana, 60.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:98897-100987:- | gene-YBL061C_AKU4011 | rna-NM_001178301.1_AKU4011 | cds-NP_009492.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:89753-91843:- | gene-YBL061C_BG1 | rna-NM_001178301.1_BG1 | cds-NP_009492.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:99511-101601:- | gene-YBL061C_Bruggeman | rna-NM_001178301.1_Bruggeman | cds-NP_009492.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:102149-104239:- | gene-YBL061C_CAT1 | rna-NM_001178301.1_CAT1 | cds-NP_009492.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:91464-93554:- | gene-YBL061C_CBS1585 | rna-NM_001178301.1_CBS1585 | cds-NP_009492.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:99970-102060:- | gene-YBL061C_CBS436 | rna-NM_001178301.1_CBS436 | cds-NP_009492.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:89970-92060:- | gene-YBL061C_CBS6412 | rna-NM_001178301.1_CBS6412 | cds-NP_009492.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:97042-99132:- | gene-YBL061C_CBS6413 | rna-NM_001178301.1_CBS6413 | cds-NP_009492.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:99075-101167:- | gene-YBL061C_CENPK1137D | rna-NM_001178301.1_CENPK1137D | cds-NP_009492.1_CENPK1137D | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:112896-114986:- | gene-YBL061C_EthanolRed | rna-NM_001178301.1_EthanolRed | cds-NP_009492.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:113749-115839:- | gene-YBL061C_FaliES1 | rna-NM_001178301.1_FaliES1 | cds-NP_009492.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:16368-18457:- | gene-YBL061C_JAY291 | rna-NM_001178301.1_JAY291 | cds-NP_009492.1_JAY291 | 99.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:98886-100976:- | gene-YBL061C_MUCL30387 | rna-NM_001178301.1_MUCL30387 | cds-NP_009492.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:100164-102254:- | gene-YBL061C_MUCL30388 | rna-NM_001178301.1_MUCL30388 | cds-NP_009492.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:91645-93735:- | gene-YBL061C_MUCL39482 | rna-NM_001178301.1_MUCL39482 | cds-NP_009492.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:98478-100568:- | gene-YBL061C_MUCL42920 | rna-NM_001178301.1_MUCL42920 | cds-NP_009492.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:105113-107203:- | gene-YBL061C_NCIM3186 | rna-NM_001178301.1_NCIM3186 | cds-NP_009492.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:92787-94877:- | gene-YBL061C_NCYC1407 | rna-NM_001178301.1_NCYC1407 | cds-NP_009492.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:99043-101133:- | gene-YBL061C_PE2H3 | rna-NM_001178301.1_PE2H3 | cds-NP_009492.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:96687-98777:- | gene-YBL061C_PE2H4 | rna-NM_001178301.1_PE2H4 | cds-NP_009492.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:105316-107406:- | gene-YBL061C_S288C | rna-NM_001178301.1_S288C | cds-NP_009492.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:89422-91512:- | gene-YBL061C_SA1 | rna-NM_001178301.1_SA1 | cds-NP_009492.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:113710-115800:- | gene-YBL061C_ThermosaccDry | rna-NM_001178301.1_ThermosaccDry | cds-NP_009492.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:95877-97967:- | gene-YBL061C_VR1 | rna-NM_001178301.1_VR1 | cds-NP_009492.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:90427-92516:- | gene-YBL061C_ZTW1 | rna-NM_001178301.1_ZTW1 | cds-NP_009492.1_ZTW1 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:125088-127178:- | gene-YBL061C_Sparadoxus | rna-NM_001178301.1_Sparadoxus | cds-NP_009492.1_Sparadoxus | 90.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |