Gene name: SKP2
Reference locus (S288C): YNL311C
Gene biotype: protein_coding
Description: F-box protein of unknown function; predicted to be part of an SCF ubiquitin protease complex; involved in regulating protein levels of sulfur metabolism enzymes; may interact with ribosomes, based on co-purification experiments
Top 10 interactors (score): SKP1 (0.974); MET14 (0.891); CTF13 (0.745); YOR238W (0.718); CEP3 (0.679); CDC53 (0.661); VPS68 (0.656); YHI9 (0.619); DMA1 (0.612); CKS1 (0.61); YJL120W (0.593); CYS4 (0.592); CYS3 (0.592); ATC1 (0.562); MET30 (0.551); YLR149C (0.528); UBP16 (0.526); HAP1 (0.499); RFU1 (0.499); MET31 (0.499)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:43199-45490:- | gene-YNL311C_AKU4011 | rna-NM_001183149.1_AKU4011 | cds-NP_014088.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:45151-47442:+ | gene-YNL311C_BG1 | rna-NM_001183149.1_BG1 | cds-NP_014088.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:52538-54829:- | gene-YNL311C_Bruggeman | rna-NM_001183149.1_Bruggeman | cds-NP_014088.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:55153-57444:- | gene-YNL311C_CAT1 | rna-NM_001183149.1_CAT1 | cds-NP_014088.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:43531-45822:- | gene-YNL311C_CBS1585 | rna-NM_001183149.1_CBS1585 | cds-NP_014088.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:44023-46314:- | gene-YNL311C_CBS436 | rna-NM_001183149.1_CBS436 | cds-NP_014088.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:40190-42481:- | gene-YNL311C_CBS6412 | rna-NM_001183149.1_CBS6412 | cds-NP_014088.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:40379-42670:- | gene-YNL311C_CBS6413 | rna-NM_001183149.1_CBS6413 | cds-NP_014088.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:43224-45515:- | gene-YNL311C_CENPK1137D | rna-NM_001183149.1_CENPK1137D | cds-NP_014088.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:40221-42512:- | gene-YNL311C_EthanolRed | rna-NM_001183149.1_EthanolRed | cds-NP_014088.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:41120-43411:- | gene-YNL311C_FaliES1 | rna-NM_001183149.1_FaliES1 | cds-NP_014088.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:12106-14397:+ | gene-YNL311C_JAY291 | rna-NM_001183149.1_JAY291 | cds-NP_014088.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:52793-55084:- | gene-YNL311C_MUCL30387 | rna-NM_001183149.1_MUCL30387 | cds-NP_014088.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:45824-48115:- | gene-YNL311C_MUCL30388 | rna-NM_001183149.1_MUCL30388 | cds-NP_014088.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:41167-43458:- | gene-YNL311C_MUCL39482 | rna-NM_001183149.1_MUCL39482 | cds-NP_014088.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:42859-45150:- | gene-YNL311C_MUCL42920 | rna-NM_001183149.1_MUCL42920 | cds-NP_014088.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:49366-51657:- | gene-YNL311C_NCIM3186 | rna-NM_001183149.1_NCIM3186 | cds-NP_014088.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:42499-44790:- | gene-YNL311C_NCYC1407 | rna-NM_001183149.1_NCYC1407 | cds-NP_014088.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:39701-41992:- | gene-YNL311C_PE2H3 | rna-NM_001183149.1_PE2H3 | cds-NP_014088.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:39089-41380:- | gene-YNL311C_PE2H4 | rna-NM_001183149.1_PE2H4 | cds-NP_014088.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:49397-51688:- | gene-YNL311C_S288C | rna-NM_001183149.1_S288C | cds-NP_014088.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:45536-47827:+ | gene-YNL311C_SA1 | rna-NM_001183149.1_SA1 | cds-NP_014088.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:41977-44268:- | gene-YNL311C_ThermosaccDry | rna-NM_001183149.1_ThermosaccDry | cds-NP_014088.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:54516-56807:- | gene-YNL311C_VR1 | rna-NM_001183149.1_VR1 | cds-NP_014088.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:33191-35482:- | gene-YNL311C_ZTW1 | rna-NM_001183149.1_ZTW1 | cds-NP_014088.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:51182-53473:- | gene-YNL311C_Sparadoxus | rna-NM_001183149.1_Sparadoxus | cds-NP_014088.1_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |