Gene name: SKN1
Reference locus (S288C): YGR143W
Gene biotype: protein_coding
Description: Protein involved in sphingolipid biosynthesis; type II membrane protein; SKN1 has a paralog, KRE6, that arose from the whole genome duplication
Top 10 interactors (score): IPT1 (0.923); SUR1 (0.733); CWH41 (0.708); ISC1 (0.695); TRS20 (0.674); KRE6 (0.667); LAC1 (0.585); ROT2 (0.583); KRE5 (0.582); STP22 (0.57); DDI1 (0.567); YGR259C (0.562); YOR292C (0.526); YNR063W (0.497); OPI9 (0.487); KEG1 (0.486); YER134C (0.485); YPK2 (0.483); YBR056W (0.477); ROT1 (0.467)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:754686-757001:+ | gene-YGR143W_AKU4011 | rna-NM_001181272.3_AKU4011 | cds-NP_011659.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:32954-35269:+ | gene-YGR143W_BG1 | rna-NM_001181272.3_BG1 | cds-NP_011659.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:757348-759663:+ | gene-YGR143W_Bruggeman | rna-NM_001181272.3_Bruggeman | cds-NP_011659.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:756211-758526:+ | gene-YGR143W_CAT1 | rna-NM_001181272.3_CAT1 | cds-NP_011659.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:755420-757735:+ | gene-YGR143W_CBS1585 | rna-NM_001181272.3_CBS1585 | cds-NP_011659.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:759279-761594:+ | gene-YGR143W_CBS436 | rna-NM_001181272.3_CBS436 | cds-NP_011659.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:746440-748755:+ | gene-YGR143W_CBS6412 | rna-NM_001181272.3_CBS6412 | cds-NP_011659.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:752278-754593:+ | gene-YGR143W_CBS6413 | rna-NM_001181272.3_CBS6413 | cds-NP_011659.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:774926-777241:+ | gene-YGR143W_CENPK1137D | rna-NM_001181272.3_CENPK1137D | cds-NP_011659.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:740988-743303:+ | gene-YGR143W_EthanolRed | rna-NM_001181272.3_EthanolRed | cds-NP_011659.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:745076-747391:+ | gene-YGR143W_FaliES1 | rna-NM_001181272.3_FaliES1 | cds-NP_011659.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000224.1:9793-12108:- | gene-YGR143W_JAY291 | rna-NM_001181272.3_JAY291 | cds-NP_011659.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:756469-758784:+ | gene-YGR143W_MUCL30387 | rna-NM_001181272.3_MUCL30387 | cds-NP_011659.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:757250-759565:+ | gene-YGR143W_MUCL30388 | rna-NM_001181272.3_MUCL30388 | cds-NP_011659.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:750896-753211:+ | gene-YGR143W_MUCL39482 | rna-NM_001181272.3_MUCL39482 | cds-NP_011659.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:762365-764680:+ | gene-YGR143W_MUCL42920 | rna-NM_001181272.3_MUCL42920 | cds-NP_011659.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:775193-777508:+ | gene-YGR143W_NCIM3186 | rna-NM_001181272.3_NCIM3186 | cds-NP_011659.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:746096-748411:+ | gene-YGR143W_NCYC1407 | rna-NM_001181272.3_NCYC1407 | cds-NP_011659.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:765436-767751:+ | gene-YGR143W_PE2H3 | rna-NM_001181272.3_PE2H3 | cds-NP_011659.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:770546-772861:+ | gene-YGR143W_PE2H4 | rna-NM_001181272.3_PE2H4 | cds-NP_011659.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:775193-777508:+ | gene-YGR143W_S288C | rna-NM_001181272.3_S288C | cds-NP_011659.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:10327-12642:+ | gene-YGR143W_SA1 | rna-NM_001181272.3_SA1 | cds-NP_011659.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:765699-768014:+ | gene-YGR143W_ThermosaccDry | rna-NM_001181272.3_ThermosaccDry | cds-NP_011659.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:869680-871995:+ | gene-YGR143W_VR1 | rna-NM_001181272.3_VR1 | cds-NP_011659.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:67839-70154:+ | gene-YGR143W_ZTW1 | rna-NM_001181272.3_ZTW1 | cds-NP_011659.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:755778-758093:+ | gene-YGR143W_Sparadoxus | rna-NM_001181272.3_Sparadoxus | cds-NP_011659.3_Sparadoxus | 90.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |