Gene name: SKI8
Reference locus (S288C): YGL213C
Gene biotype: protein_coding
Description: Antiviral protein SKI8; Ski complex component and WD-repeat protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype
Top 10 interactors (score): CDC73 (0.999); LEO1 (0.999); CTR9 (0.999); SPO11 (0.999); SKI3 (0.999); SKI2 (0.999); SKI7 (0.996); RTF1 (0.995); CSL4 (0.985); REC102 (0.969); SKI6 (0.965); REC104 (0.962); XRN1 (0.956); DIS3 (0.949); RRP40 (0.939); RPL10 (0.931); MTR3 (0.928); PAF1 (0.928); RRP46 (0.924); SPT5 (0.916)
Homologues (species, bitscore): WDR61 (Homo sapiens, 57.8); Wdr61 (Mus musculus, 58.5); wdr61 (Xenopus tropicalis, 56.2); CG3909 (Drosophila melanogaster, 55.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:91399-92592:- | gene-YGL213C_AKU4011 | rna-NM_001181078.1_AKU4011 | cds-NP_011302.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:84461-85654:- | gene-YGL213C_BG1 | rna-NM_001181078.1_BG1 | cds-NP_011302.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:91907-93100:- | gene-YGL213C_Bruggeman | rna-NM_001181078.1_Bruggeman | cds-NP_011302.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:90573-91766:- | gene-YGL213C_CAT1 | rna-NM_001181078.1_CAT1 | cds-NP_011302.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:95704-96897:- | gene-YGL213C_CBS1585 | rna-NM_001181078.1_CBS1585 | cds-NP_011302.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:91267-92460:- | gene-YGL213C_CBS436 | rna-NM_001181078.1_CBS436 | cds-NP_011302.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:82835-84028:- | gene-YGL213C_CBS6412 | rna-NM_001181078.1_CBS6412 | cds-NP_011302.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:89539-90732:- | gene-YGL213C_CBS6413 | rna-NM_001181078.1_CBS6413 | cds-NP_011302.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:90085-91278:- | gene-YGL213C_CENPK1137D | rna-NM_001181078.1_CENPK1137D | cds-NP_011302.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:82200-83393:- | gene-YGL213C_EthanolRed | rna-NM_001181078.1_EthanolRed | cds-NP_011302.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:83043-84236:- | gene-YGL213C_FaliES1 | rna-NM_001181078.1_FaliES1 | cds-NP_011302.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000397.1:9449-10642:- | gene-YGL213C_JAY291 | rna-NM_001181078.1_JAY291 | cds-NP_011302.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:91824-93017:- | gene-YGL213C_MUCL30387 | rna-NM_001181078.1_MUCL30387 | cds-NP_011302.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:94002-95195:- | gene-YGL213C_MUCL30388 | rna-NM_001181078.1_MUCL30388 | cds-NP_011302.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:92217-93410:- | gene-YGL213C_MUCL39482 | rna-NM_001181078.1_MUCL39482 | cds-NP_011302.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:95320-96513:- | gene-YGL213C_MUCL42920 | rna-NM_001181078.1_MUCL42920 | cds-NP_011302.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:90054-91247:- | gene-YGL213C_NCIM3186 | rna-NM_001181078.1_NCIM3186 | cds-NP_011302.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:83939-85132:- | gene-YGL213C_NCYC1407 | rna-NM_001181078.1_NCYC1407 | cds-NP_011302.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:86766-87959:- | gene-YGL213C_PE2H3 | rna-NM_001181078.1_PE2H3 | cds-NP_011302.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:86314-87507:- | gene-YGL213C_PE2H4 | rna-NM_001181078.1_PE2H4 | cds-NP_011302.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:90054-91247:- | gene-YGL213C_S288C | rna-NM_001181078.1_S288C | cds-NP_011302.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:284036-285229:+ | gene-YGL213C_SA1 | rna-NM_001181078.1_SA1 | cds-NP_011302.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:83304-84497:- | gene-YGL213C_ThermosaccDry | rna-NM_001181078.1_ThermosaccDry | cds-NP_011302.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:91181-92374:- | gene-YGL213C_VR1 | rna-NM_001181078.1_VR1 | cds-NP_011302.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:82344-83537:- | gene-YGL213C_ZTW1 | rna-NM_001181078.1_ZTW1 | cds-NP_011302.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:89480-90673:- | gene-YGL213C_Sparadoxus | rna-NM_001181078.1_Sparadoxus | cds-NP_011302.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |