Gene name: SKI6
Reference locus (S288C): YGR195W
Gene biotype: protein_coding
Description: Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp41p (EXOSC4)
Top 10 interactors (score): RRP42 (0.999); RRP4 (0.999); DIS3 (0.999); MTR4 (0.999); RRP43 (0.999); RRP6 (0.999); CSL4 (0.999); RRP40 (0.999); RRP46 (0.999); SKI7 (0.999); MPP6 (0.999); MTR3 (0.999); RRP45 (0.999); LRP1 (0.995); SKI2 (0.987); IMP4 (0.978); SKI3 (0.969); SKI8 (0.965); ENP1 (0.959); UTP7 (0.942)
Homologues (species, bitscore): EXOSC4 (Homo sapiens, 157.1); Exosc4 (Mus musculus, 159.5); exosc4 (Danio rerio, 156.8); exosc4 (Xenopus tropicalis, 109.4); Ski6 (Drosophila melanogaster, 141.4); exos-4.1 (Caenorhabditis elegans, 118.6); RRP41 (Arabidopsis thaliana, 155.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:854407-855147:+ | gene-YGR195W_AKU4011 | rna-NM_001181324.3_AKU4011 | cds-NP_011711.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:134735-135475:+ | gene-YGR195W_BG1 | rna-NM_001181324.3_BG1 | cds-NP_011711.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:862606-863346:+ | gene-YGR195W_Bruggeman | rna-NM_001181324.3_Bruggeman | cds-NP_011711.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:860602-861342:+ | gene-YGR195W_CAT1 | rna-NM_001181324.3_CAT1 | cds-NP_011711.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:857847-858587:+ | gene-YGR195W_CBS1585 | rna-NM_001181324.3_CBS1585 | cds-NP_011711.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:861201-861941:+ | gene-YGR195W_CBS436 | rna-NM_001181324.3_CBS436 | cds-NP_011711.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:848718-849458:+ | gene-YGR195W_CBS6412 | rna-NM_001181324.3_CBS6412 | cds-NP_011711.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:854776-855516:+ | gene-YGR195W_CBS6413 | rna-NM_001181324.3_CBS6413 | cds-NP_011711.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:888608-889348:+ | gene-YGR195W_CENPK1137D | rna-NM_001181324.3_CENPK1137D | cds-NP_011711.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:843227-843967:+ | gene-YGR195W_EthanolRed | rna-NM_001181324.3_EthanolRed | cds-NP_011711.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:847618-848358:+ | gene-YGR195W_FaliES1 | rna-NM_001181324.3_FaliES1 | cds-NP_011711.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000148.1:5344-6084:+ | gene-YGR195W_JAY291 | rna-NM_001181324.3_JAY291 | cds-NP_011711.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:860091-860831:+ | gene-YGR195W_MUCL30387 | rna-NM_001181324.3_MUCL30387 | cds-NP_011711.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:859777-860517:+ | gene-YGR195W_MUCL30388 | rna-NM_001181324.3_MUCL30388 | cds-NP_011711.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:852921-853661:+ | gene-YGR195W_MUCL39482 | rna-NM_001181324.3_MUCL39482 | cds-NP_011711.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:870471-871211:+ | gene-YGR195W_MUCL42920 | rna-NM_001181324.3_MUCL42920 | cds-NP_011711.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:888882-889622:+ | gene-YGR195W_NCIM3186 | rna-NM_001181324.3_NCIM3186 | cds-NP_011711.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:848579-849319:+ | gene-YGR195W_NCYC1407 | rna-NM_001181324.3_NCYC1407 | cds-NP_011711.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:873184-873924:+ | gene-YGR195W_PE2H3 | rna-NM_001181324.3_PE2H3 | cds-NP_011711.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:878294-879034:+ | gene-YGR195W_PE2H4 | rna-NM_001181324.3_PE2H4 | cds-NP_011711.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:888882-889622:+ | gene-YGR195W_S288C | rna-NM_001181324.3_S288C | cds-NP_011711.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000101.1:10335-11075:+ | gene-YGR195W_SA1 | rna-NM_001181324.3_SA1 | cds-NP_011711.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:868129-868869:+ | gene-YGR195W_ThermosaccDry | rna-NM_001181324.3_ThermosaccDry | cds-NP_011711.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:972614-973354:+ | gene-YGR195W_VR1 | rna-NM_001181324.3_VR1 | cds-NP_011711.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:169577-170317:+ | gene-YGR195W_ZTW1 | rna-NM_001181324.3_ZTW1 | cds-NP_011711.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:860166-860906:+ | gene-YGR195W_Sparadoxus | rna-NM_001181324.3_Sparadoxus | cds-NP_011711.3_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |