Gene name: SKG6
Reference locus (S288C): YHR149C
Gene biotype: protein_coding
Description: Protein SKG6; Integral membrane protein; localizes primarily to growing sites such as the bud tip or the cell periphery; potential Cdc28p substrate; Skg6p interacts with Zds1p and Zds2p; SKG6 has a paralog, TOS2, that arose from the whole genome duplication
Top 10 interactors (score): MLF3 (0.745); HUA2 (0.691); YOL019W (0.676); ZDS1 (0.634); AKL1 (0.617); YBL111C (0.614); YLR177W (0.597); ZDS2 (0.588); VHS2 (0.57); PIN2 (0.56); TDA9 (0.529); SRL1 (0.523); GIC1 (0.489); NRD1 (0.489); RRP14 (0.485); PDC2 (0.482); CLA4 (0.476); GIC2 (0.472); RNR1 (0.47); BSP1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:381547-383751:- | gene-YHR149C_AKU4011 | rna-NM_001179280.1_AKU4011 | cds-NP_012019.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:133997-136201:+ | gene-YHR149C_BG1 | rna-NM_001179280.1_BG1 | cds-NP_012019.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:388790-390994:- | gene-YHR149C_Bruggeman | rna-NM_001179280.1_Bruggeman | cds-NP_012019.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:384192-386393:- | gene-YHR149C_CAT1 | rna-NM_001179280.1_CAT1 | cds-NP_012019.1_CAT1 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:381003-383207:- | gene-YHR149C_CBS1585 | rna-NM_001179280.1_CBS1585 | cds-NP_012019.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:378445-380646:- | gene-YHR149C_CBS436 | rna-NM_001179280.1_CBS436 | cds-NP_012019.1_CBS436 | 99.1 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:381443-383647:- | gene-YHR149C_CBS6412 | rna-NM_001179280.1_CBS6412 | cds-NP_012019.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:381884-384088:- | gene-YHR149C_CBS6413 | rna-NM_001179280.1_CBS6413 | cds-NP_012019.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:387628-389832:- | gene-YHR149C_CENPK1137D | rna-NM_001179280.1_CENPK1137D | cds-NP_012019.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:440084-442288:- | gene-YHR149C_EthanolRed | rna-NM_001179280.1_EthanolRed | cds-NP_012019.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:382527-384731:- | gene-YHR149C_FaliES1 | rna-NM_001179280.1_FaliES1 | cds-NP_012019.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:55112-57313:+ | gene-YHR149C_JAY291 | rna-NM_001179280.1_JAY291 | cds-NP_012019.1_JAY291 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:389871-392075:- | gene-YHR149C_MUCL30387 | rna-NM_001179280.1_MUCL30387 | cds-NP_012019.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:389311-391515:- | gene-YHR149C_MUCL30388 | rna-NM_001179280.1_MUCL30388 | cds-NP_012019.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:380914-383118:- | gene-YHR149C_MUCL39482 | rna-NM_001179280.1_MUCL39482 | cds-NP_012019.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:387463-389664:- | gene-YHR149C_MUCL42920 | rna-NM_001179280.1_MUCL42920 | cds-NP_012019.1_MUCL42920 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:394337-396541:- | gene-YHR149C_NCIM3186 | rna-NM_001179280.1_NCIM3186 | cds-NP_012019.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:383372-385576:- | gene-YHR149C_NCYC1407 | rna-NM_001179280.1_NCYC1407 | cds-NP_012019.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:382501-384702:- | gene-YHR149C_PE2H3 | rna-NM_001179280.1_PE2H3 | cds-NP_012019.1_PE2H3 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:389928-392129:- | gene-YHR149C_PE2H4 | rna-NM_001179280.1_PE2H4 | cds-NP_012019.1_PE2H4 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:394455-396659:- | gene-YHR149C_S288C | rna-NM_001179280.1_S288C | cds-NP_012019.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:55168-57372:+ | gene-YHR149C_SA1 | rna-NM_001179280.1_SA1 | cds-NP_012019.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:383610-385814:- | gene-YHR149C_ThermosaccDry | rna-NM_001179280.1_ThermosaccDry | cds-NP_012019.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:391422-393626:- | gene-YHR149C_VR1 | rna-NM_001179280.1_VR1 | cds-NP_012019.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:373853-376057:- | gene-YHR149C_ZTW1 | rna-NM_001179280.1_ZTW1 | cds-NP_012019.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:379994-382198:- | gene-YHR149C_Sparadoxus | rna-NM_001179280.1_Sparadoxus | cds-NP_012019.1_Sparadoxus | 87.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |