Gene name: SKG3
Reference locus (S288C): YLR187W
Gene biotype: protein_coding
Description: CCR4-NOT transcriptional complex subunit CAF120; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; potential Cdc28p substrate; similar to Skg4p; relocalizes from bud neck to cytoplasm upon DNA replication stress; SKG3 has a paralog, CAF120, that arose from the whole genome duplication
Top 10 interactors (score): CAF120 (0.859); RBH1 (0.777); RBH2 (0.749); CDC28 (0.69); AGE1 (0.619); FRT2 (0.616); FUS2 (0.613); PIB2 (0.566); RAV1 (0.563); YDR124W (0.563); ATE1 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:478985-482065:+ | gene-YLR187W_AKU4011 | rna-NM_001182074.1_AKU4011 | cds-NP_013288.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:36182-39262:+ | gene-YLR187W_BG1 | rna-NM_001182074.1_BG1 | cds-NP_013288.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:519234-522314:+ | gene-YLR187W_Bruggeman | rna-NM_001182074.1_Bruggeman | cds-NP_013288.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:518828-521908:+ | gene-YLR187W_CAT1 | rna-NM_001182074.1_CAT1 | cds-NP_013288.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:514482-517562:+ | gene-YLR187W_CBS1585 | rna-NM_001182074.1_CBS1585 | cds-NP_013288.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:504620-507700:+ | gene-YLR187W_CBS436 | rna-NM_001182074.1_CBS436 | cds-NP_013288.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:483039-486119:+ | gene-YLR187W_CBS6412 | rna-NM_001182074.1_CBS6412 | cds-NP_013288.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:514774-517854:+ | gene-YLR187W_CBS6413 | rna-NM_001182074.1_CBS6413 | cds-NP_013288.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:509516-512596:+ | gene-YLR187W_CENPK1137D | rna-NM_001182074.1_CENPK1137D | cds-NP_013288.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:478511-481591:+ | gene-YLR187W_EthanolRed | rna-NM_001182074.1_EthanolRed | cds-NP_013288.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:507438-510518:+ | gene-YLR187W_FaliES1 | rna-NM_001182074.1_FaliES1 | cds-NP_013288.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:34337-37417:+ | gene-YLR187W_JAY291 | rna-NM_001182074.1_JAY291 | cds-NP_013288.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:519255-522335:+ | gene-YLR187W_MUCL30387 | rna-NM_001182074.1_MUCL30387 | cds-NP_013288.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:524187-527267:+ | gene-YLR187W_MUCL30388 | rna-NM_001182074.1_MUCL30388 | cds-NP_013288.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:515463-518543:+ | gene-YLR187W_MUCL39482 | rna-NM_001182074.1_MUCL39482 | cds-NP_013288.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:515959-519039:+ | gene-YLR187W_MUCL42920 | rna-NM_001182074.1_MUCL42920 | cds-NP_013288.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:524839-527919:+ | gene-YLR187W_NCIM3186 | rna-NM_001182074.1_NCIM3186 | cds-NP_013288.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:507890-510970:+ | gene-YLR187W_NCYC1407 | rna-NM_001182074.1_NCYC1407 | cds-NP_013288.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:512126-515206:+ | gene-YLR187W_PE2H3 | rna-NM_001182074.1_PE2H3 | cds-NP_013288.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:511870-514950:+ | gene-YLR187W_PE2H4 | rna-NM_001182074.1_PE2H4 | cds-NP_013288.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:524865-527945:+ | gene-YLR187W_S288C | rna-NM_001182074.1_S288C | cds-NP_013288.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:34395-37475:+ | gene-YLR187W_SA1 | rna-NM_001182074.1_SA1 | cds-NP_013288.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:509941-513021:+ | gene-YLR187W_ThermosaccDry | rna-NM_001182074.1_ThermosaccDry | cds-NP_013288.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:521239-524319:+ | gene-YLR187W_VR1 | rna-NM_001182074.1_VR1 | cds-NP_013288.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:34231-37311:+ | gene-YLR187W_ZTW1 | rna-NM_001182074.1_ZTW1 | cds-NP_013288.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:496076-499149:+ | gene-YLR187W_Sparadoxus | rna-NM_001182074.1_Sparadoxus | cds-NP_013288.1_Sparadoxus | 87.2 | 99.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |