Gene name: SKA1
Reference locus (S288C): YKL023W
Gene biotype: protein_coding
Description: Uncharacterized protein YKL023W; Putative protein of unknown function; predicted by computational methods to be involved in mRNA degradation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm
Top 10 interactors (score): SKI2 (0.85); SKI8 (0.827); ENV11 (0.745); NMD2 (0.71); SKI3 (0.699); NMD4 (0.691); EBS1 (0.658); VID22 (0.619); DCN1 (0.61); ENT5 (0.495); XRN1 (0.465); VIK1 (0.452); TBF1 (0.45); YDL176W (0.45); YBR277C (0.45); SRP40 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:379739-380572:+ | gene-YKL023W_AKU4011 | rna-NM_001179589.4_AKU4011 | cds-NP_012902.4_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:263333-264166:- | gene-YKL023W_BG1 | rna-NM_001179589.4_BG1 | cds-NP_012902.4_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:401435-402268:+ | gene-YKL023W_Bruggeman | rna-NM_001179589.4_Bruggeman | cds-NP_012902.4_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:396549-397382:+ | gene-YKL023W_CAT1 | rna-NM_001179589.4_CAT1 | cds-NP_012902.4_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:392458-393291:+ | gene-YKL023W_CBS1585 | rna-NM_001179589.4_CBS1585 | cds-NP_012902.4_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:391307-392152:+ | gene-YKL023W_CBS436 | rna-NM_001179589.4_CBS436 | cds-NP_012902.4_CBS436 | 98.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:376614-377447:+ | gene-YKL023W_CBS6412 | rna-NM_001179589.4_CBS6412 | cds-NP_012902.4_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:392313-393146:+ | gene-YKL023W_CBS6413 | rna-NM_001179589.4_CBS6413 | cds-NP_012902.4_CBS6413 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:393398-394231:+ | gene-YKL023W_CENPK1137D | rna-NM_001179589.4_CENPK1137D | cds-NP_012902.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:390235-391068:+ | gene-YKL023W_EthanolRed | rna-NM_001179589.4_EthanolRed | cds-NP_012902.4_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:392325-393158:+ | gene-YKL023W_FaliES1 | rna-NM_001179589.4_FaliES1 | cds-NP_012902.4_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000142.1:37892-38725:- | gene-YKL023W_JAY291 | rna-NM_001179589.4_JAY291 | cds-NP_012902.4_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:400750-401583:+ | gene-YKL023W_MUCL30387 | rna-NM_001179589.4_MUCL30387 | cds-NP_012902.4_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:396359-397192:+ | gene-YKL023W_MUCL30388 | rna-NM_001179589.4_MUCL30388 | cds-NP_012902.4_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:391775-392608:+ | gene-YKL023W_MUCL39482 | rna-NM_001179589.4_MUCL39482 | cds-NP_012902.4_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:397602-398435:+ | gene-YKL023W_MUCL42920 | rna-NM_001179589.4_MUCL42920 | cds-NP_012902.4_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:393710-394543:+ | gene-YKL023W_NCIM3186 | rna-NM_001179589.4_NCIM3186 | cds-NP_012902.4_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:391967-392800:+ | gene-YKL023W_NCYC1407 | rna-NM_001179589.4_NCYC1407 | cds-NP_012902.4_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:416657-417490:+ | gene-YKL023W_PE2H3 | rna-NM_001179589.4_PE2H3 | cds-NP_012902.4_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:401401-402234:+ | gene-YKL023W_PE2H4 | rna-NM_001179589.4_PE2H4 | cds-NP_012902.4_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:393721-394554:+ | gene-YKL023W_S288C | rna-NM_001179589.4_S288C | cds-NP_012902.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:71999-72832:+ | gene-YKL023W_SA1 | rna-NM_001179589.4_SA1 | cds-NP_012902.4_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:392424-393257:+ | gene-YKL023W_ThermosaccDry | rna-NM_001179589.4_ThermosaccDry | cds-NP_012902.4_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:391680-392513:+ | gene-YKL023W_VR1 | rna-NM_001179589.4_VR1 | cds-NP_012902.4_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:390452-391285:+ | gene-YKL023W_ZTW1 | rna-NM_001179589.4_ZTW1 | cds-NP_012902.4_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:415435-416283:+ | gene-YKL023W_Sparadoxus | rna-NM_001179589.4_Sparadoxus | cds-NP_012902.4_Sparadoxus | 81.7 | 97.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |