Gene name: SIP4
Reference locus (S288C): YJL089W
Gene biotype: protein_coding
Description: Protein SIP4; C6 zinc cluster transcriptional activator; binds to the carbon source-responsive element (CSRE) of gluconeogenic genes; involved in the positive regulation of gluconeogenesis; regulated by Snf1p protein kinase; localized to the nucleus
Top 10 interactors (score): SNF1 (0.982); GAL83 (0.881); ADR1 (0.865); SIP2 (0.838); CAT2 (0.815); MIG1 (0.813); RDS2 (0.812); CRC1 (0.803); SNF4 (0.791); SIP1 (0.788); FBP1 (0.775); ICL1 (0.771); MLS1 (0.761); SFC1 (0.76); PCK1 (0.749); ERT1 (0.748); HAP4 (0.711); ACS1 (0.696); RGT1 (0.692); JEN1 (0.684)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:248642-251131:+ | gene-YJL089W_AKU4011 | rna-NM_001181522.1_AKU4011 | cds-NP_012446.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:363322-365811:- | gene-YJL089W_BG1 | rna-NM_001181522.1_BG1 | cds-NP_012446.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:260089-262578:+ | gene-YJL089W_Bruggeman | rna-NM_001181522.1_Bruggeman | cds-NP_012446.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:264982-267471:+ | gene-YJL089W_CAT1 | rna-NM_001181522.1_CAT1 | cds-NP_012446.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:260303-262792:+ | gene-YJL089W_CBS1585 | rna-NM_001181522.1_CBS1585 | cds-NP_012446.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:278417-280906:+ | gene-YJL089W_CBS436 | rna-NM_001181522.1_CBS436 | cds-NP_012446.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:249400-251889:+ | gene-YJL089W_CBS6412 | rna-NM_001181522.1_CBS6412 | cds-NP_012446.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:250755-253244:+ | gene-YJL089W_CBS6413 | rna-NM_001181522.1_CBS6413 | cds-NP_012446.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:248395-250884:+ | gene-YJL089W_CENPK1137D | rna-NM_001181522.1_CENPK1137D | cds-NP_012446.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:252489-254978:+ | gene-YJL089W_EthanolRed | rna-NM_001181522.1_EthanolRed | cds-NP_012446.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:264063-266552:+ | gene-YJL089W_FaliES1 | rna-NM_001181522.1_FaliES1 | cds-NP_012446.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:61686-64175:+ | gene-YJL089W_JAY291 | rna-NM_001181522.1_JAY291 | cds-NP_012446.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:262359-264848:+ | gene-YJL089W_MUCL30387 | rna-NM_001181522.1_MUCL30387 | cds-NP_012446.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:258434-260923:+ | gene-YJL089W_MUCL30388 | rna-NM_001181522.1_MUCL30388 | cds-NP_012446.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:253060-255549:+ | gene-YJL089W_MUCL39482 | rna-NM_001181522.1_MUCL39482 | cds-NP_012446.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:259267-261756:+ | gene-YJL089W_MUCL42920 | rna-NM_001181522.1_MUCL42920 | cds-NP_012446.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:265905-268394:+ | gene-YJL089W_NCIM3186 | rna-NM_001181522.1_NCIM3186 | cds-NP_012446.1_NCIM3186 | 67.2 | 80.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:251748-254237:+ | gene-YJL089W_NCYC1407 | rna-NM_001181522.1_NCYC1407 | cds-NP_012446.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:264112-266601:+ | gene-YJL089W_PE2H3 | rna-NM_001181522.1_PE2H3 | cds-NP_012446.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:263756-266245:+ | gene-YJL089W_PE2H4 | rna-NM_001181522.1_PE2H4 | cds-NP_012446.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:265926-268415:+ | gene-YJL089W_S288C | rna-NM_001181522.1_S288C | cds-NP_012446.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:61623-64106:+ | gene-YJL089W_SA1 | rna-NM_001181522.1_SA1 | cds-NP_012446.1_SA1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:257475-259964:+ | gene-YJL089W_ThermosaccDry | rna-NM_001181522.1_ThermosaccDry | cds-NP_012446.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:258990-261479:+ | gene-YJL089W_VR1 | rna-NM_001181522.1_VR1 | cds-NP_012446.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:238835-241324:+ | gene-YJL089W_ZTW1 | rna-NM_001181522.1_ZTW1 | cds-NP_012446.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:262914-265403:+ | gene-YJL089W_Sparadoxus | rna-NM_001181522.1_Sparadoxus | cds-NP_012446.1_Sparadoxus | 88.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |