Gene name: SIN4
Reference locus (S288C): YNL236W
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; contributes to both postive and negative transcriptional regulation; dispensible for basal transcription
Top 10 interactors (score): RGR1 (0.999); GAL11 (0.999); SRB4 (0.998); PGD1 (0.998); SRB5 (0.997); MED2 (0.997); SSN8 (0.996); ROX3 (0.996); NUT1 (0.996); MED7 (0.996); MED8 (0.996); SRB8 (0.995); SRB6 (0.993); SOH1 (0.993); SRB7 (0.993); NUT2 (0.992); CSE2 (0.991); SRB2 (0.99); SSN2 (0.985); MED1 (0.979)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:200709-203633:+ | gene-YNL236W_AKU4011 | rna-NM_001183074.1_AKU4011 | cds-NP_014163.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:104655-107579:+ | gene-YNL236W_BG1 | rna-NM_001183074.1_BG1 | cds-NP_014163.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:210760-213684:+ | gene-YNL236W_Bruggeman | rna-NM_001183074.1_Bruggeman | cds-NP_014163.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:217814-220837:+ | gene-YNL236W_CAT1 | rna-NM_001183074.1_CAT1 | cds-NP_014163.1_CAT1 | 95.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:201106-204030:+ | gene-YNL236W_CBS1585 | rna-NM_001183074.1_CBS1585 | cds-NP_014163.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:196195-199119:+ | gene-YNL236W_CBS436 | rna-NM_001183074.1_CBS436 | cds-NP_014163.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:197140-200064:+ | gene-YNL236W_CBS6412 | rna-NM_001183074.1_CBS6412 | cds-NP_014163.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:197788-200712:+ | gene-YNL236W_CBS6413 | rna-NM_001183074.1_CBS6413 | cds-NP_014163.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:200741-203665:+ | gene-YNL236W_CENPK1137D | rna-NM_001183074.1_CENPK1137D | cds-NP_014163.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:198358-201282:+ | gene-YNL236W_EthanolRed | rna-NM_001183074.1_EthanolRed | cds-NP_014163.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:193100-196024:+ | gene-YNL236W_FaliES1 | rna-NM_001183074.1_FaliES1 | cds-NP_014163.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:104243-107167:+ | gene-YNL236W_JAY291 | rna-NM_001183074.1_JAY291 | cds-NP_014163.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:206294-209218:+ | gene-YNL236W_MUCL30387 | rna-NM_001183074.1_MUCL30387 | cds-NP_014163.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:204879-207803:+ | gene-YNL236W_MUCL30388 | rna-NM_001183074.1_MUCL30388 | cds-NP_014163.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:198596-201520:+ | gene-YNL236W_MUCL39482 | rna-NM_001183074.1_MUCL39482 | cds-NP_014163.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:200851-203775:+ | gene-YNL236W_MUCL42920 | rna-NM_001183074.1_MUCL42920 | cds-NP_014163.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:206899-209823:+ | gene-YNL236W_NCIM3186 | rna-NM_001183074.1_NCIM3186 | cds-NP_014163.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:200686-203610:+ | gene-YNL236W_NCYC1407 | rna-NM_001183074.1_NCYC1407 | cds-NP_014163.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:197586-200510:+ | gene-YNL236W_PE2H3 | rna-NM_001183074.1_PE2H3 | cds-NP_014163.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:196974-199898:+ | gene-YNL236W_PE2H4 | rna-NM_001183074.1_PE2H4 | cds-NP_014163.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:206930-209854:+ | gene-YNL236W_S288C | rna-NM_001183074.1_S288C | cds-NP_014163.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:42446-45370:- | gene-YNL236W_SA1 | rna-NM_001183074.1_SA1 | cds-NP_014163.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:193956-196880:+ | gene-YNL236W_ThermosaccDry | rna-NM_001183074.1_ThermosaccDry | cds-NP_014163.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:212844-215867:+ | gene-YNL236W_VR1 | rna-NM_001183074.1_VR1 | cds-NP_014163.1_VR1 | 96.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:104275-107199:+ | gene-YNL236W_ZTW1 | rna-NM_001183074.1_ZTW1 | cds-NP_014163.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:204283-207207:+ | gene-YNL236W_Sparadoxus | rna-NM_001183074.1_Sparadoxus | cds-NP_014163.1_Sparadoxus | 90.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |