Gene name: SIM1
Reference locus (S288C): YIL123W
Gene biotype: protein_coding
Description: Probable secreted beta-glucosidase SIM1; Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p); may participate in DNA replication; promoter contains SCB regulation box at -300 bp indicating that expression may be cell cycle-regulated; SIM1 has a paralog, SUN4, that arose from the whole genome duplication
Top 10 interactors (score): SRL1 (0.895); PBP4 (0.87); YGL188C-A (0.842); PBP2 (0.816); UTH1 (0.78); YKL068W-A (0.754); SPO21 (0.651); YOR248W (0.632); CIS3 (0.629); PBP1 (0.617); TOS4 (0.614); TOM5 (0.571); TOS1 (0.545); CBK1 (0.538); SSD1 (0.524); AFG3 (0.482); TOS6 (0.47); YER053C-A (0.451); DSK2 (0.45); HOC1 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:129359-130735:+ | gene-YIL123W_AKU4011 | rna-NM_001179471.2_AKU4011 | cds-NP_012143.2_AKU4011 | 96.0 | 96.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:6971-8401:- | gene-YIL123W_BG1 | rna-NM_001179471.2_BG1 | cds-NP_012143.2_BG1 | 97.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:132110-133534:+ | gene-YIL123W_Bruggeman | rna-NM_001179471.2_Bruggeman | cds-NP_012143.2_Bruggeman | 99.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:125988-127418:+ | gene-YIL123W_CAT1 | rna-NM_001179471.2_CAT1 | cds-NP_012143.2_CAT1 | 97.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:129590-130966:+ | gene-YIL123W_CBS1585 | rna-NM_001179471.2_CBS1585 | cds-NP_012143.2_CBS1585 | 96.0 | 96.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:120730-122154:+ | gene-YIL123W_CBS436 | rna-NM_001179471.2_CBS436 | cds-NP_012143.2_CBS436 | 99.5 | 99.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:127078-128445:+ | gene-YIL123W_CBS6412 | rna-NM_001179471.2_CBS6412 | cds-NP_012143.2_CBS6412 | 95.4 | 95.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:120838-122214:+ | gene-YIL123W_CBS6413 | rna-NM_001179471.2_CBS6413 | cds-NP_012143.2_CBS6413 | 96.0 | 96.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:119851-121281:+ | gene-YIL123W_CENPK1137D | rna-NM_001179471.2_CENPK1137D | cds-NP_012143.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:114643-116064:+ | gene-YIL123W_EthanolRed | rna-NM_001179471.2_EthanolRed | cds-NP_012143.2_EthanolRed | 99.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:130694-132115:+ | gene-YIL123W_FaliES1 | rna-NM_001179471.2_FaliES1 | cds-NP_012143.2_FaliES1 | 99.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000383.1:17210-18640:- | gene-YIL123W_JAY291 | rna-NM_001179471.2_JAY291 | cds-NP_012143.2_JAY291 | 97.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:129964-131382:+ | gene-YIL123W_MUCL30387 | rna-NM_001179471.2_MUCL30387 | cds-NP_012143.2_MUCL30387 | 98.9 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:129548-130966:+ | gene-YIL123W_MUCL30388 | rna-NM_001179471.2_MUCL30388 | cds-NP_012143.2_MUCL30388 | 98.9 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:130536-131912:+ | gene-YIL123W_MUCL39482 | rna-NM_001179471.2_MUCL39482 | cds-NP_012143.2_MUCL39482 | 96.0 | 96.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:133723-135152:+ | gene-YIL123W_MUCL42920 | rna-NM_001179471.2_MUCL42920 | cds-NP_012143.2_MUCL42920 | 85.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:128151-129581:+ | gene-YIL123W_NCIM3186 | rna-NM_001179471.2_NCIM3186 | cds-NP_012143.2_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:134522-135898:+ | gene-YIL123W_NCYC1407 | rna-NM_001179471.2_NCYC1407 | cds-NP_012143.2_NCYC1407 | 95.9 | 96.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:129201-130631:+ | gene-YIL123W_PE2H3 | rna-NM_001179471.2_PE2H3 | cds-NP_012143.2_PE2H3 | 97.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:123176-124606:+ | gene-YIL123W_PE2H4 | rna-NM_001179471.2_PE2H4 | cds-NP_012143.2_PE2H4 | 97.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:128151-129581:+ | gene-YIL123W_S288C | rna-NM_001179471.2_S288C | cds-NP_012143.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:53689-55119:- | gene-YIL123W_SA1 | rna-NM_001179471.2_SA1 | cds-NP_012143.2_SA1 | 97.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:129351-130772:+ | gene-YIL123W_ThermosaccDry | rna-NM_001179471.2_ThermosaccDry | cds-NP_012143.2_ThermosaccDry | 99.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:126510-127940:+ | gene-YIL123W_VR1 | rna-NM_001179471.2_VR1 | cds-NP_012143.2_VR1 | 97.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:104286-105662:+ | gene-YIL123W_ZTW1 | rna-NM_001179471.2_ZTW1 | cds-NP_012143.2_ZTW1 | 96.0 | 96.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:122094-123488:+ | gene-YIL123W_Sparadoxus | rna-NM_001179471.2_Sparadoxus | cds-NP_012143.2_Sparadoxus | 85.5 | 95.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |