Gene name: SIF2
Reference locus (S288C): YBR103W
Gene biotype: protein_coding
Description: SIR4-interacting protein SIF2; WD40 repeat-containing subunit of Set3C histone deacetylase complex; complex represses early/middle sporulation genes; antagonizes telomeric silencing; binds specifically to the Sir4p N-terminus
Top 10 interactors (score): SNT1 (0.999); SET3 (0.999); HOS4 (0.999); HOS2 (0.999); CPR1 (0.999); RPD3 (0.996); HST1 (0.974); CTI6 (0.961); PHO23 (0.957); SIN3 (0.954); HHT2 (0.943); SDS3 (0.936); SAP30 (0.935); HTB1 (0.926); HTB2 (0.925); UME6 (0.922); UME1 (0.92); HTA1 (0.92); HTA2 (0.92); DEP1 (0.919)
Homologues (species, bitscore): TBL1XR1 (Homo sapiens, 171.4); Tbl1xr1 (Mus musculus, 171.0); tbl1xr1b (Danio rerio, 168.3); tbl1xr1 (Xenopus tropicalis, 149.8); ebi (Drosophila melanogaster, 122.5); sel-10 (Caenorhabditis elegans, 65.1); HOS15 (Arabidopsis thaliana, 130.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:430071-431678:+ | gene-YBR103W_AKU4011 | rna-NM_001178451.1_AKU4011 | cds-NP_009661.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:421113-422720:+ | gene-YBR103W_BG1 | rna-NM_001178451.1_BG1 | cds-NP_009661.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:431849-433456:+ | gene-YBR103W_Bruggeman | rna-NM_001178451.1_Bruggeman | cds-NP_009661.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:434620-436227:+ | gene-YBR103W_CAT1 | rna-NM_001178451.1_CAT1 | cds-NP_009661.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:422356-423963:+ | gene-YBR103W_CBS1585 | rna-NM_001178451.1_CBS1585 | cds-NP_009661.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:430478-432085:+ | gene-YBR103W_CBS436 | rna-NM_001178451.1_CBS436 | cds-NP_009661.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:520584-522191:+ | gene-YBR103W_CBS6412 | rna-NM_001178451.1_CBS6412 | cds-NP_009661.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:427495-429102:+ | gene-YBR103W_CBS6413 | rna-NM_001178451.1_CBS6413 | cds-NP_009661.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:439609-441216:+ | gene-YBR103W_CENPK1137D | rna-NM_001178451.1_CENPK1137D | cds-NP_009661.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:556866-558473:+ | gene-YBR103W_EthanolRed | rna-NM_001178451.1_EthanolRed | cds-NP_009661.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:446149-447756:+ | gene-YBR103W_FaliES1 | rna-NM_001178451.1_FaliES1 | cds-NP_009661.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000312.1:17053-18660:+ | gene-YBR103W_JAY291 | rna-NM_001178451.1_JAY291 | cds-NP_009661.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:433884-435491:+ | gene-YBR103W_MUCL30387 | rna-NM_001178451.1_MUCL30387 | cds-NP_009661.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:432883-434490:+ | gene-YBR103W_MUCL30388 | rna-NM_001178451.1_MUCL30388 | cds-NP_009661.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:420499-422106:+ | gene-YBR103W_MUCL39482 | rna-NM_001178451.1_MUCL39482 | cds-NP_009661.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:429563-431170:+ | gene-YBR103W_MUCL42920 | rna-NM_001178451.1_MUCL42920 | cds-NP_009661.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:447506-449113:+ | gene-YBR103W_NCIM3186 | rna-NM_001178451.1_NCIM3186 | cds-NP_009661.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:423278-424885:+ | gene-YBR103W_NCYC1407 | rna-NM_001178451.1_NCYC1407 | cds-NP_009661.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:435898-437505:+ | gene-YBR103W_PE2H3 | rna-NM_001178451.1_PE2H3 | cds-NP_009661.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:433574-435181:+ | gene-YBR103W_PE2H4 | rna-NM_001178451.1_PE2H4 | cds-NP_009661.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:447709-449316:+ | gene-YBR103W_S288C | rna-NM_001178451.1_S288C | cds-NP_009661.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:28394-30001:- | gene-YBR103W_SA1 | rna-NM_001178451.1_SA1 | cds-NP_009661.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:445156-446763:+ | gene-YBR103W_ThermosaccDry | rna-NM_001178451.1_ThermosaccDry | cds-NP_009661.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:427159-428766:+ | gene-YBR103W_VR1 | rna-NM_001178451.1_VR1 | cds-NP_009661.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:420817-422424:+ | gene-YBR103W_ZTW1 | rna-NM_001178451.1_ZTW1 | cds-NP_009661.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:457710-459335:+ | gene-YBR103W_Sparadoxus | rna-NM_001178451.1_Sparadoxus | cds-NP_009661.1_Sparadoxus | 86.7 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |