Gene name: SHU2
Reference locus (S288C): YDR078C
Gene biotype: protein_coding
Description: Suppressor of hydroxyurea sensitivity protein 2; Component of Shu complex (aka PCSS complex); Shu complex also includes Psy3, Csm2, Shu1, and promotes error-free DNA repair, Shu complex mediates inhibition of Srs2p function; promotes formation of Rad51p filaments; important for both mitotic and meiotic homologous recombination, and contains a conserved SWIM domain that is necessary for both
Top 10 interactors (score): CSM2 (0.999); PSY3 (0.999); SHU1 (0.999); RAD2 (0.931); RAD4 (0.914); TFB1 (0.902); RAD23 (0.9); RAD3 (0.9); SSL1 (0.9); RAD16 (0.9); RAD7 (0.9); ABF1 (0.9); SSL2 (0.9); SGS1 (0.888); RAD55 (0.878); RAD51 (0.875); RTR2 (0.863); RAD1 (0.839); SRS2 (0.816); RAD54 (0.814)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:579750-580421:- | gene-YDR078C_AKU4011 | rna-NM_001180386.1_AKU4011 | cds-NP_010363.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:544916-545587:+ | gene-YDR078C_BG1 | rna-NM_001180386.1_BG1 | cds-NP_010363.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:611981-612652:- | gene-YDR078C_Bruggeman | rna-NM_001180386.1_Bruggeman | cds-NP_010363.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:595626-596297:- | gene-YDR078C_CAT1 | rna-NM_001180386.1_CAT1 | cds-NP_010363.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:570766-571437:- | gene-YDR078C_CBS1585 | rna-NM_001180386.1_CBS1585 | cds-NP_010363.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:595797-596468:- | gene-YDR078C_CBS436 | rna-NM_001180386.1_CBS436 | cds-NP_010363.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:567181-567852:- | gene-YDR078C_CBS6412 | rna-NM_001180386.1_CBS6412 | cds-NP_010363.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:595714-596385:- | gene-YDR078C_CBS6413 | rna-NM_001180386.1_CBS6413 | cds-NP_010363.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:601209-601880:- | gene-YDR078C_CENPK1137D | rna-NM_001180386.1_CENPK1137D | cds-NP_010363.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:581540-582211:- | gene-YDR078C_EthanolRed | rna-NM_001180386.1_EthanolRed | cds-NP_010363.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:588334-589005:- | gene-YDR078C_FaliES1 | rna-NM_001180386.1_FaliES1 | cds-NP_010363.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:42255-42926:+ | gene-YDR078C_JAY291 | rna-NM_001180386.1_JAY291 | cds-NP_010363.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:596598-597269:- | gene-YDR078C_MUCL30387 | rna-NM_001180386.1_MUCL30387 | cds-NP_010363.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:586910-587581:- | gene-YDR078C_MUCL30388 | rna-NM_001180386.1_MUCL30388 | cds-NP_010363.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:572136-572807:- | gene-YDR078C_MUCL39482 | rna-NM_001180386.1_MUCL39482 | cds-NP_010363.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:502718-503389:- | gene-YDR078C_MUCL42920 | rna-NM_001180386.1_MUCL42920 | cds-NP_010363.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:602121-602792:- | gene-YDR078C_NCIM3186 | rna-NM_001180386.1_NCIM3186 | cds-NP_010363.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:571061-571732:- | gene-YDR078C_NCYC1407 | rna-NM_001180386.1_NCYC1407 | cds-NP_010363.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:590522-591193:- | gene-YDR078C_PE2H3 | rna-NM_001180386.1_PE2H3 | cds-NP_010363.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:589827-590498:- | gene-YDR078C_PE2H4 | rna-NM_001180386.1_PE2H4 | cds-NP_010363.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:602198-602869:- | gene-YDR078C_S288C | rna-NM_001180386.1_S288C | cds-NP_010363.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:42462-43133:+ | gene-YDR078C_SA1 | rna-NM_001180386.1_SA1 | cds-NP_010363.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:587865-588536:- | gene-YDR078C_ThermosaccDry | rna-NM_001180386.1_ThermosaccDry | cds-NP_010363.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:600426-601097:- | gene-YDR078C_VR1 | rna-NM_001180386.1_VR1 | cds-NP_010363.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:585437-586108:- | gene-YDR078C_ZTW1 | rna-NM_001180386.1_ZTW1 | cds-NP_010363.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:590110-590781:- | gene-YDR078C_Sparadoxus | rna-NM_001180386.1_Sparadoxus | cds-NP_010363.1_Sparadoxus | 89.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |