Gene name: SHU1
Reference locus (S288C): YHL006C
Gene biotype: protein_coding
Description: Suppressor of HU sensitivity involved in recombination protein 1; Component of Shu complex (aka PCSS complex); Shu complex also includes Psy3, Csm2, Shu2, and promotes error-free DNA repair, mediates inhibition of Srs2p function; essential for promoting the establishment of homolog bias during meiotic homologous recombination; promotes both crossover (CO) and non-crossover (NCO) pathways of meiotic recombination and formation of Rad51p filaments
Top 10 interactors (score): PSY3 (0.999); SHU2 (0.999); CSM2 (0.999); RAD2 (0.93); RAD4 (0.913); SGS1 (0.903); ABF1 (0.9); SSL2 (0.9); RAD23 (0.9); TFB1 (0.9); RAD7 (0.9); RAD3 (0.9); SSL1 (0.9); RAD16 (0.9); RAD5 (0.89); MPH1 (0.861); RAD52 (0.847); RAD55 (0.826); RAD57 (0.824); ESC2 (0.803)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:86957-87409:- | gene-YHL006C_AKU4011 | rna-NM_001179086.1_AKU4011 | cds-NP_011857.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:6661-7113:- | gene-YHL006C_BG1 | rna-NM_001179086.1_BG1 | cds-NP_011857.2_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:93813-94265:- | gene-YHL006C_Bruggeman | rna-NM_001179086.1_Bruggeman | cds-NP_011857.2_Bruggeman | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:87787-88239:- | gene-YHL006C_CAT1 | rna-NM_001179086.1_CAT1 | cds-NP_011857.2_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:87544-87996:- | gene-YHL006C_CBS1585 | rna-NM_001179086.1_CBS1585 | cds-NP_011857.2_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:80034-80486:- | gene-YHL006C_CBS436 | rna-NM_001179086.1_CBS436 | cds-NP_011857.2_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:87143-87595:- | gene-YHL006C_CBS6412 | rna-NM_001179086.1_CBS6412 | cds-NP_011857.2_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:86868-87320:- | gene-YHL006C_CBS6413 | rna-NM_001179086.1_CBS6413 | cds-NP_011857.2_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:91504-91956:- | gene-YHL006C_CENPK1137D | rna-NM_001179086.1_CENPK1137D | cds-NP_011857.2_CENPK1137D | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:86952-87404:- | gene-YHL006C_EthanolRed | rna-NM_001179086.1_EthanolRed | cds-NP_011857.2_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:87481-87933:- | gene-YHL006C_FaliES1 | rna-NM_001179086.1_FaliES1 | cds-NP_011857.2_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000422.1:6051-6503:+ | gene-YHL006C_JAY291 | rna-NM_001179086.1_JAY291 | cds-NP_011857.2_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:90553-91005:- | gene-YHL006C_MUCL30387 | rna-NM_001179086.1_MUCL30387 | cds-NP_011857.2_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:91763-92215:- | gene-YHL006C_MUCL30388 | rna-NM_001179086.1_MUCL30388 | cds-NP_011857.2_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:86570-87022:- | gene-YHL006C_MUCL39482 | rna-NM_001179086.1_MUCL39482 | cds-NP_011857.2_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:90467-90919:- | gene-YHL006C_MUCL42920 | rna-NM_001179086.1_MUCL42920 | cds-NP_011857.2_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:98225-98677:- | gene-YHL006C_NCIM3186 | rna-NM_001179086.1_NCIM3186 | cds-NP_011857.2_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:85989-86441:- | gene-YHL006C_NCYC1407 | rna-NM_001179086.1_NCYC1407 | cds-NP_011857.2_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:88180-88632:- | gene-YHL006C_PE2H3 | rna-NM_001179086.1_PE2H3 | cds-NP_011857.2_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:95621-96073:- | gene-YHL006C_PE2H4 | rna-NM_001179086.1_PE2H4 | cds-NP_011857.2_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:98343-98795:- | gene-YHL006C_S288C | rna-NM_001179086.1_S288C | cds-NP_011857.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:47758-48210:+ | gene-YHL006C_SA1 | rna-NM_001179086.1_SA1 | cds-NP_011857.2_SA1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:88571-89023:- | gene-YHL006C_ThermosaccDry | rna-NM_001179086.1_ThermosaccDry | cds-NP_011857.2_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:94107-94559:- | gene-YHL006C_VR1 | rna-NM_001179086.1_VR1 | cds-NP_011857.2_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:79736-80188:- | gene-YHL006C_ZTW1 | rna-NM_001179086.1_ZTW1 | cds-NP_011857.2_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:86272-86724:- | gene-YHL006C_Sparadoxus | rna-NM_001179086.1_Sparadoxus | cds-NP_011857.2_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |