Gene name: SHR3
Reference locus (S288C): YDL212W
Gene biotype: protein_coding
Description: Secretory component protein SHR3; Endoplasmic reticulum packaging chaperone; required for incorporation of amino acid permeases into COPII coated vesicles for transport to the cell surface
Top 10 interactors (score): GAP1 (0.925); SSH4 (0.83); HIP1 (0.782); GSF2 (0.777); SEC23 (0.755); RCR2 (0.713); VMA22 (0.713); SSY1 (0.701); SEC12 (0.68); VPH2 (0.671); PTR3 (0.671); LOA1 (0.668); NAP1 (0.668); SEC13 (0.652); AGP1 (0.641); SSY5 (0.619); YMR103C (0.617); YBR013C (0.617); ERV14 (0.611); EMP24 (0.603)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:61912-62544:+ | gene-YDL212W_AKU4011 | rna-NM_001180272.1_AKU4011 | cds-NP_010069.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000077.1:4525-5157:- | gene-YDL212W_BG1 | rna-NM_001180272.1_BG1 | cds-NP_010069.1_BG1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:78303-78935:+ | gene-YDL212W_Bruggeman | rna-NM_001180272.1_Bruggeman | cds-NP_010069.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:297438-298070:+ | gene-YDL212W_CAT1 | rna-NM_001180272.1_CAT1 | cds-NP_010069.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:60787-61419:+ | gene-YDL212W_CBS1585 | rna-NM_001180272.1_CBS1585 | cds-NP_010069.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:275668-276300:+ | gene-YDL212W_CBS436 | rna-NM_001180272.1_CBS436 | cds-NP_010069.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:60899-61531:+ | gene-YDL212W_CBS6412 | rna-NM_001180272.1_CBS6412 | cds-NP_010069.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:78422-79054:+ | gene-YDL212W_CBS6413 | rna-NM_001180272.1_CBS6413 | cds-NP_010069.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:77092-77724:+ | gene-YDL212W_CENPK1137D | rna-NM_001180272.1_CENPK1137D | cds-NP_010069.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:74357-74989:+ | gene-YDL212W_EthanolRed | rna-NM_001180272.1_EthanolRed | cds-NP_010069.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:78684-79316:+ | gene-YDL212W_FaliES1 | rna-NM_001180272.1_FaliES1 | cds-NP_010069.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000213.1:33011-33643:+ | gene-YDL212W_JAY291 | rna-NM_001180272.1_JAY291 | cds-NP_010069.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:76536-77168:+ | gene-YDL212W_MUCL30387 | rna-NM_001180272.1_MUCL30387 | cds-NP_010069.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:284354-284986:+ | gene-YDL212W_MUCL30388 | rna-NM_001180272.1_MUCL30388 | cds-NP_010069.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:61630-62262:+ | gene-YDL212W_MUCL39482 | rna-NM_001180272.1_MUCL39482 | cds-NP_010069.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:77686-78318:+ | gene-YDL212W_MUCL42920 | rna-NM_001180272.1_MUCL42920 | cds-NP_010069.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:78349-78981:+ | gene-YDL212W_NCIM3186 | rna-NM_001180272.1_NCIM3186 | cds-NP_010069.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:61586-62218:+ | gene-YDL212W_NCYC1407 | rna-NM_001180272.1_NCYC1407 | cds-NP_010069.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:68624-69256:+ | gene-YDL212W_PE2H3 | rna-NM_001180272.1_PE2H3 | cds-NP_010069.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:68634-69266:+ | gene-YDL212W_PE2H4 | rna-NM_001180272.1_PE2H4 | cds-NP_010069.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:78426-79058:+ | gene-YDL212W_S288C | rna-NM_001180272.1_S288C | cds-NP_010069.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000094.1:32819-33451:+ | gene-YDL212W_SA1 | rna-NM_001180272.1_SA1 | cds-NP_010069.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:78439-79071:+ | gene-YDL212W_ThermosaccDry | rna-NM_001180272.1_ThermosaccDry | cds-NP_010069.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:79391-80023:+ | gene-YDL212W_VR1 | rna-NM_001180272.1_VR1 | cds-NP_010069.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:77609-78241:+ | gene-YDL212W_ZTW1 | rna-NM_001180272.1_ZTW1 | cds-NP_010069.1_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:80973-81605:+ | gene-YDL212W_Sparadoxus | rna-NM_001180272.1_Sparadoxus | cds-NP_010069.1_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |