Gene name: SHQ1
Reference locus (S288C): YIL104C
Gene biotype: protein_coding
Description: Chaperone protein; required for the assembly of box H/ACA snoRNPs and thus for pre-rRNA processing; functions as an RNA mimic; forms a complex with Naf1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; homology with known Hsp90p cochaperones; relocalizes to the cytosol in response to hypoxia; Belongs to the SHQ1 family
Top 10 interactors (score): NHP2 (0.999); CBF5 (0.999); NOP10 (0.998); GAR1 (0.994); NOP58 (0.956); NAF1 (0.937); RVB1 (0.924); NOP56 (0.923); RVB2 (0.91); PUS4 (0.894); SNU13 (0.891); PIH1 (0.844); HSP82 (0.836); HSC82 (0.818); UTP25 (0.745); TAH1 (0.745); RSA1 (0.678); CBC2 (0.645); DBP8 (0.625); UTP9 (0.609)
Homologues (species, bitscore): SHQ1 (Homo sapiens, 175.3); Shq1 (Mus musculus, 179.5); shq1 (Danio rerio, 178.7); shq1 (Xenopus tropicalis, 183.0); CG10055 (Drosophila melanogaster, 52.0); Y48A5A.1 (Caenorhabditis elegans, 93.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:171448-172971:- | gene-YIL104C_AKU4011 | rna-NM_001179452.3_AKU4011 | cds-NP_012162.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:34393-35916:- | gene-YIL104C_BG1 | rna-NM_001179452.3_BG1 | cds-NP_012162.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:176084-177607:- | gene-YIL104C_Bruggeman | rna-NM_001179452.3_Bruggeman | cds-NP_012162.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:168135-169658:- | gene-YIL104C_CAT1 | rna-NM_001179452.3_CAT1 | cds-NP_012162.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:171704-173227:- | gene-YIL104C_CBS1585 | rna-NM_001179452.3_CBS1585 | cds-NP_012162.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:162631-164154:- | gene-YIL104C_CBS436 | rna-NM_001179452.3_CBS436 | cds-NP_012162.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:169084-170607:- | gene-YIL104C_CBS6412 | rna-NM_001179452.3_CBS6412 | cds-NP_012162.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:162737-164260:- | gene-YIL104C_CBS6413 | rna-NM_001179452.3_CBS6413 | cds-NP_012162.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:161695-163218:- | gene-YIL104C_CENPK1137D | rna-NM_001179452.3_CENPK1137D | cds-NP_012162.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:156671-158194:- | gene-YIL104C_EthanolRed | rna-NM_001179452.3_EthanolRed | cds-NP_012162.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:172666-174189:- | gene-YIL104C_FaliES1 | rna-NM_001179452.3_FaliES1 | cds-NP_012162.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:54344-55867:+ | gene-YIL104C_JAY291 | rna-NM_001179452.3_JAY291 | cds-NP_012162.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:172920-174443:- | gene-YIL104C_MUCL30387 | rna-NM_001179452.3_MUCL30387 | cds-NP_012162.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:171662-173185:- | gene-YIL104C_MUCL30388 | rna-NM_001179452.3_MUCL30388 | cds-NP_012162.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:172550-174073:- | gene-YIL104C_MUCL39482 | rna-NM_001179452.3_MUCL39482 | cds-NP_012162.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:175804-177327:- | gene-YIL104C_MUCL42920 | rna-NM_001179452.3_MUCL42920 | cds-NP_012162.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:169982-171505:- | gene-YIL104C_NCIM3186 | rna-NM_001179452.3_NCIM3186 | cds-NP_012162.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:176593-178116:- | gene-YIL104C_NCYC1407 | rna-NM_001179452.3_NCYC1407 | cds-NP_012162.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:171092-172615:- | gene-YIL104C_PE2H3 | rna-NM_001179452.3_PE2H3 | cds-NP_012162.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:165127-166650:- | gene-YIL104C_PE2H4 | rna-NM_001179452.3_PE2H4 | cds-NP_012162.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:169982-171505:- | gene-YIL104C_S288C | rna-NM_001179452.3_S288C | cds-NP_012162.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:11874-13397:+ | gene-YIL104C_SA1 | rna-NM_001179452.3_SA1 | cds-NP_012162.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:171335-172858:- | gene-YIL104C_ThermosaccDry | rna-NM_001179452.3_ThermosaccDry | cds-NP_012162.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:168239-169762:- | gene-YIL104C_VR1 | rna-NM_001179452.3_VR1 | cds-NP_012162.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:146268-147791:- | gene-YIL104C_ZTW1 | rna-NM_001179452.3_ZTW1 | cds-NP_012162.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:164096-165619:- | gene-YIL104C_Sparadoxus | rna-NM_001179452.3_Sparadoxus | cds-NP_012162.3_Sparadoxus | 88.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |