Gene name: SHH4
Reference locus (S288C): YLR164W
Gene biotype: protein_coding
Description: Mitochondrial inner membrane protein SHH4; Putative alternate subunit of succinate dehydrogenase (SDH); mitochondrial inner membrane protein; genetic interaction with SDH4 suggests that Shh4p can function as a functional SDH subunit; a fraction copurifies with SDH subunit Sdh3p; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner; Shh4p has greater similarity to human SDHD (subunit D of SDH, implicated in paraganglioma) than does its paralog Sdh4p; Belongs to the CybS family
Top 10 interactors (score): SHH3 (0.994); SDH3 (0.993); YJL045W (0.982); SDH2 (0.975); FUM1 (0.965); SDH1 (0.935); LSC1 (0.909); SDH4 (0.885); UGA2 (0.822); FMP41 (0.801); ARG4 (0.8); ACP1 (0.766); SHE9 (0.728); LSC2 (0.677); ATP5 (0.659); RIP1 (0.652); IDP3 (0.629); ALT1 (0.61); ALT2 (0.61); MAS2 (0.606)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:447986-448492:+ | gene-YLR164W_AKU4011 | rna-NM_001182051.1_AKU4011 | cds-NP_013265.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:5217-5724:+ | gene-YLR164W_BG1 | rna-NM_001182051.1_BG1 | cds-NP_013265.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:488330-488837:+ | gene-YLR164W_Bruggeman | rna-NM_001182051.1_Bruggeman | cds-NP_013265.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:487860-488367:+ | gene-YLR164W_CAT1 | rna-NM_001182051.1_CAT1 | cds-NP_013265.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:483483-483989:+ | gene-YLR164W_CBS1585 | rna-NM_001182051.1_CBS1585 | cds-NP_013265.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:473626-474133:+ | gene-YLR164W_CBS436 | rna-NM_001182051.1_CBS436 | cds-NP_013265.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:452054-452560:+ | gene-YLR164W_CBS6412 | rna-NM_001182051.1_CBS6412 | cds-NP_013265.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:483789-484295:+ | gene-YLR164W_CBS6413 | rna-NM_001182051.1_CBS6413 | cds-NP_013265.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:478603-479110:+ | gene-YLR164W_CENPK1137D | rna-NM_001182051.1_CENPK1137D | cds-NP_013265.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:447507-448013:+ | gene-YLR164W_EthanolRed | rna-NM_001182051.1_EthanolRed | cds-NP_013265.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:476434-476940:+ | gene-YLR164W_FaliES1 | rna-NM_001182051.1_FaliES1 | cds-NP_013265.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:3370-3877:+ | gene-YLR164W_JAY291 | rna-NM_001182051.1_JAY291 | cds-NP_013265.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:488351-488858:+ | gene-YLR164W_MUCL30387 | rna-NM_001182051.1_MUCL30387 | cds-NP_013265.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:493283-493790:+ | gene-YLR164W_MUCL30388 | rna-NM_001182051.1_MUCL30388 | cds-NP_013265.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:484480-484986:+ | gene-YLR164W_MUCL39482 | rna-NM_001182051.1_MUCL39482 | cds-NP_013265.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:485055-485562:+ | gene-YLR164W_MUCL42920 | rna-NM_001182051.1_MUCL42920 | cds-NP_013265.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:493857-494363:+ | gene-YLR164W_NCIM3186 | rna-NM_001182051.1_NCIM3186 | cds-NP_013265.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:476904-477410:+ | gene-YLR164W_NCYC1407 | rna-NM_001182051.1_NCYC1407 | cds-NP_013265.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:481157-481664:+ | gene-YLR164W_PE2H3 | rna-NM_001182051.1_PE2H3 | cds-NP_013265.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:480901-481408:+ | gene-YLR164W_PE2H4 | rna-NM_001182051.1_PE2H4 | cds-NP_013265.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:493883-494389:+ | gene-YLR164W_S288C | rna-NM_001182051.1_S288C | cds-NP_013265.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:3428-3935:+ | gene-YLR164W_SA1 | rna-NM_001182051.1_SA1 | cds-NP_013265.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:478958-479464:+ | gene-YLR164W_ThermosaccDry | rna-NM_001182051.1_ThermosaccDry | cds-NP_013265.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:490270-490777:+ | gene-YLR164W_VR1 | rna-NM_001182051.1_VR1 | cds-NP_013265.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:3325-3832:+ | gene-YLR164W_ZTW1 | rna-NM_001182051.1_ZTW1 | cds-NP_013265.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:464807-465314:+ | gene-YLR164W_Sparadoxus | rna-NM_001182051.1_Sparadoxus | cds-NP_013265.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |