Gene name: SHH3
Reference locus (S288C): YMR118C
Gene biotype: protein_coding
Description: Putative mitochondrial inner membrane protein of unknown function; although similar to paralogous Sdh3p, Shh3p is not a stoichiometric subunit of either succinate dehydrogenase or of the TIM22 translocase; SHH3 has a paralog, SDH3, that arose from the whole genome duplication
Top 10 interactors (score): SDH2 (0.999); YJL045W (0.997); SHH4 (0.994); SDH1 (0.988); SDH4 (0.983); FUM1 (0.979); LSC1 (0.969); TIM18 (0.961); SDH3 (0.956); QCR8 (0.907); ATP3 (0.898); RIP1 (0.874); ATP16 (0.872); KGD1 (0.853); LSC2 (0.852); COX4 (0.829); ATP5 (0.827); FMP41 (0.81); UGA2 (0.809); QCR2 (0.806)
Homologues (species, bitscore): SDHC (Homo sapiens, 50.1); sdhc (Danio rerio, 51.2); sdhc (Xenopus tropicalis, 57.8); SdhC (Drosophila melanogaster, 62.4); mev-1 (Caenorhabditis elegans, 72.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:540316-540906:- | gene-YMR118C_AKU4011 | rna-NM_001182618.1_AKU4011 | cds-NP_013836.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:1941-2531:+ | gene-YMR118C_BG1 | rna-NM_001182618.1_BG1 | cds-NP_013836.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:482502-483092:- | gene-YMR118C_Bruggeman | rna-NM_001182618.1_Bruggeman | cds-NP_013836.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:483719-484309:- | gene-YMR118C_CAT1 | rna-NM_001182618.1_CAT1 | cds-NP_013836.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:473759-474349:- | gene-YMR118C_CBS1585 | rna-NM_001182618.1_CBS1585 | cds-NP_013836.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:478676-479266:- | gene-YMR118C_CBS436 | rna-NM_001182618.1_CBS436 | cds-NP_013836.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:586366-586956:- | gene-YMR118C_CBS6412 | rna-NM_001182618.1_CBS6412 | cds-NP_013836.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:472520-473110:- | gene-YMR118C_CBS6413 | rna-NM_001182618.1_CBS6413 | cds-NP_013836.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:496668-497258:- | gene-YMR118C_CENPK1137D | rna-NM_001182618.1_CENPK1137D | cds-NP_013836.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:472938-473528:- | gene-YMR118C_EthanolRed | rna-NM_001182618.1_EthanolRed | cds-NP_013836.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:478258-478848:- | gene-YMR118C_FaliES1 | rna-NM_001182618.1_FaliES1 | cds-NP_013836.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000380.1:1822-2412:+ | gene-YMR118C_JAY291 | rna-NM_001182618.1_JAY291 | cds-NP_013836.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:479422-480012:- | gene-YMR118C_MUCL30387 | rna-NM_001182618.1_MUCL30387 | cds-NP_013836.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:483673-484263:- | gene-YMR118C_MUCL30388 | rna-NM_001182618.1_MUCL30388 | cds-NP_013836.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:473560-474150:- | gene-YMR118C_MUCL39482 | rna-NM_001182618.1_MUCL39482 | cds-NP_013836.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:480571-481161:- | gene-YMR118C_MUCL42920 | rna-NM_001182618.1_MUCL42920 | cds-NP_013836.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:502098-502688:- | gene-YMR118C_NCIM3186 | rna-NM_001182618.1_NCIM3186 | cds-NP_013836.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:473456-474046:- | gene-YMR118C_NCYC1407 | rna-NM_001182618.1_NCYC1407 | cds-NP_013836.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:479272-479862:- | gene-YMR118C_PE2H3 | rna-NM_001182618.1_PE2H3 | cds-NP_013836.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:485367-485957:- | gene-YMR118C_PE2H4 | rna-NM_001182618.1_PE2H4 | cds-NP_013836.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:502144-502734:- | gene-YMR118C_S288C | rna-NM_001182618.1_S288C | cds-NP_013836.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:68874-69464:+ | gene-YMR118C_SA1 | rna-NM_001182618.1_SA1 | cds-NP_013836.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:474117-474707:- | gene-YMR118C_ThermosaccDry | rna-NM_001182618.1_ThermosaccDry | cds-NP_013836.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:485857-486447:- | gene-YMR118C_VR1 | rna-NM_001182618.1_VR1 | cds-NP_013836.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:450166-450756:- | gene-YMR118C_ZTW1 | rna-NM_001182618.1_ZTW1 | cds-NP_013836.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:487205-487795:- | gene-YMR118C_Sparadoxus | rna-NM_001182618.1_Sparadoxus | cds-NP_013836.1_Sparadoxus | 87.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |