Gene name: SHG1
Reference locus (S288C): YBR258C
Gene biotype: protein_coding
Description: COMPASS component SHG1; Subunit of the COMPASS (Set1C) complex; COMPASS methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres
Top 10 interactors (score): SET1 (0.998); SWD3 (0.998); BRE2 (0.998); SDC1 (0.996); SWD1 (0.99); SWD2 (0.99); SPP1 (0.989); YBR259W (0.823); SLM6 (0.811); HHT1 (0.699); HHT2 (0.698); SET2 (0.673); YBL012C (0.671); YBR071W (0.671); BRE1 (0.653); MTC4 (0.575); YBL044W (0.574); ECM15 (0.573); YBL083C (0.571); YBR300C (0.568)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:714016-714444:- | gene-YBR258C_AKU4011 | rna-NM_001178606.3_AKU4011 | cds-NP_009817.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:85041-85469:- | gene-YBR258C_BG1 | rna-NM_001178606.3_BG1 | cds-NP_009817.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:715181-715609:- | gene-YBR258C_Bruggeman | rna-NM_001178606.3_Bruggeman | cds-NP_009817.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:718908-719336:- | gene-YBR258C_CAT1 | rna-NM_001178606.3_CAT1 | cds-NP_009817.3_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:705582-706010:- | gene-YBR258C_CBS1585 | rna-NM_001178606.3_CBS1585 | cds-NP_009817.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:712030-712458:- | gene-YBR258C_CBS436 | rna-NM_001178606.3_CBS436 | cds-NP_009817.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:800197-800625:- | gene-YBR258C_CBS6412 | rna-NM_001178606.3_CBS6412 | cds-NP_009817.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:711630-712058:- | gene-YBR258C_CBS6413 | rna-NM_001178606.3_CBS6413 | cds-NP_009817.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:723642-724070:- | gene-YBR258C_CENPK1137D | rna-NM_001178606.3_CENPK1137D | cds-NP_009817.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:837053-837481:- | gene-YBR258C_EthanolRed | rna-NM_001178606.3_EthanolRed | cds-NP_009817.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:730400-730828:- | gene-YBR258C_FaliES1 | rna-NM_001178606.3_FaliES1 | cds-NP_009817.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:73228-73656:+ | gene-YBR258C_JAY291 | rna-NM_001178606.3_JAY291 | cds-NP_009817.3_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:717224-717652:- | gene-YBR258C_MUCL30387 | rna-NM_001178606.3_MUCL30387 | cds-NP_009817.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:734307-734735:- | gene-YBR258C_MUCL30388 | rna-NM_001178606.3_MUCL30388 | cds-NP_009817.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:703889-704317:- | gene-YBR258C_MUCL39482 | rna-NM_001178606.3_MUCL39482 | cds-NP_009817.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:713762-714190:- | gene-YBR258C_MUCL42920 | rna-NM_001178606.3_MUCL42920 | cds-NP_009817.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:729531-729959:- | gene-YBR258C_NCIM3186 | rna-NM_001178606.3_NCIM3186 | cds-NP_009817.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:705778-706206:- | gene-YBR258C_NCYC1407 | rna-NM_001178606.3_NCYC1407 | cds-NP_009817.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:728910-729338:- | gene-YBR258C_PE2H3 | rna-NM_001178606.3_PE2H3 | cds-NP_009817.3_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:726586-727014:- | gene-YBR258C_PE2H4 | rna-NM_001178606.3_PE2H4 | cds-NP_009817.3_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:729734-730162:- | gene-YBR258C_S288C | rna-NM_001178606.3_S288C | cds-NP_009817.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:84861-85289:- | gene-YBR258C_SA1 | rna-NM_001178606.3_SA1 | cds-NP_009817.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:729392-729820:- | gene-YBR258C_ThermosaccDry | rna-NM_001178606.3_ThermosaccDry | cds-NP_009817.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:709608-710036:- | gene-YBR258C_VR1 | rna-NM_001178606.3_VR1 | cds-NP_009817.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:702239-702667:- | gene-YBR258C_ZTW1 | rna-NM_001178606.3_ZTW1 | cds-NP_009817.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:746146-746574:- | gene-YBR258C_Sparadoxus | rna-NM_001178606.3_Sparadoxus | cds-NP_009817.3_Sparadoxus | 86.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |