Gene name: SHE3
Reference locus (S288C): YBR130C
Gene biotype: protein_coding
Description: SWI5-dependent HO expression protein 3; Protein adaptor between Myo4p and the She2p-mRNA complex; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud; also required for cortical ER inheritance
Top 10 interactors (score): SHE2 (0.999); MYO4 (0.999); ASH1 (0.975); MLC1 (0.956); PUF6 (0.943); LOC1 (0.896); HEK2 (0.88); HRB1 (0.813); IST2 (0.79); BUD6 (0.784); ACT1 (0.781); MYO2 (0.749); TPM2 (0.748); CMD1 (0.715); PUF2 (0.658); SCP160 (0.657); BNI1 (0.612); VAC17 (0.612); EAR1 (0.572); OPY1 (0.529)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:478506-479783:- | gene-YBR130C_AKU4011 | rna-NM_001178478.3_AKU4011 | cds-NP_009688.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:469047-470324:- | gene-YBR130C_BG1 | rna-NM_001178478.3_BG1 | cds-NP_009688.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:480285-481562:- | gene-YBR130C_Bruggeman | rna-NM_001178478.3_Bruggeman | cds-NP_009688.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:483453-484730:- | gene-YBR130C_CAT1 | rna-NM_001178478.3_CAT1 | cds-NP_009688.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:470289-471566:- | gene-YBR130C_CBS1585 | rna-NM_001178478.3_CBS1585 | cds-NP_009688.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:478368-479645:- | gene-YBR130C_CBS436 | rna-NM_001178478.3_CBS436 | cds-NP_009688.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:568152-569429:- | gene-YBR130C_CBS6412 | rna-NM_001178478.3_CBS6412 | cds-NP_009688.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:475917-477194:- | gene-YBR130C_CBS6413 | rna-NM_001178478.3_CBS6413 | cds-NP_009688.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:489361-490638:- | gene-YBR130C_CENPK1137D | rna-NM_001178478.3_CENPK1137D | cds-NP_009688.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:604526-605803:- | gene-YBR130C_EthanolRed | rna-NM_001178478.3_EthanolRed | cds-NP_009688.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:494543-495820:- | gene-YBR130C_FaliES1 | rna-NM_001178478.3_FaliES1 | cds-NP_009688.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000444.1:17961-19238:- | gene-YBR130C_JAY291 | rna-NM_001178478.3_JAY291 | cds-NP_009688.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:483166-484443:- | gene-YBR130C_MUCL30387 | rna-NM_001178478.3_MUCL30387 | cds-NP_009688.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:481796-483073:- | gene-YBR130C_MUCL30388 | rna-NM_001178478.3_MUCL30388 | cds-NP_009688.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:468682-469959:- | gene-YBR130C_MUCL39482 | rna-NM_001178478.3_MUCL39482 | cds-NP_009688.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:478602-479879:- | gene-YBR130C_MUCL42920 | rna-NM_001178478.3_MUCL42920 | cds-NP_009688.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:495389-496666:- | gene-YBR130C_NCIM3186 | rna-NM_001178478.3_NCIM3186 | cds-NP_009688.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:471210-472487:- | gene-YBR130C_NCYC1407 | rna-NM_001178478.3_NCYC1407 | cds-NP_009688.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:483800-485077:- | gene-YBR130C_PE2H3 | rna-NM_001178478.3_PE2H3 | cds-NP_009688.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:481476-482753:- | gene-YBR130C_PE2H4 | rna-NM_001178478.3_PE2H4 | cds-NP_009688.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:495592-496869:- | gene-YBR130C_S288C | rna-NM_001178478.3_S288C | cds-NP_009688.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:16726-18003:- | gene-YBR130C_SA1 | rna-NM_001178478.3_SA1 | cds-NP_009688.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:493550-494827:- | gene-YBR130C_ThermosaccDry | rna-NM_001178478.3_ThermosaccDry | cds-NP_009688.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:475047-476324:- | gene-YBR130C_VR1 | rna-NM_001178478.3_VR1 | cds-NP_009688.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:468700-469977:- | gene-YBR130C_ZTW1 | rna-NM_001178478.3_ZTW1 | cds-NP_009688.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:505931-507208:- | gene-YBR130C_Sparadoxus | rna-NM_001178478.3_Sparadoxus | cds-NP_009688.3_Sparadoxus | 90.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |