Gene name: SHE2
Reference locus (S288C): YKL130C
Gene biotype: protein_coding
Description: SWI5-dependent HO expression protein 2; RNA-binding protein that binds specific mRNAs and interacts with She3p; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud; binds to ER-derived membranes and targets mRNAs to cortical ER
Top 10 interactors (score): MYO4 (0.999); SHE3 (0.999); ASH1 (0.997); LOC1 (0.988); PUF6 (0.979); IST2 (0.94); MYO2 (0.903); HEK2 (0.896); SPT4 (0.889); HRB1 (0.859); ACT1 (0.841); PUF2 (0.81); WSC2 (0.809); SRL1 (0.806); MMR1 (0.792); BUD6 (0.784); SCP160 (0.758); SRO7 (0.75); JSN1 (0.745); PUF3 (0.726)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:182184-182924:- | gene-YKL130C_AKU4011 | rna-NM_001179696.1_AKU4011 | cds-NP_012792.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:159347-160087:- | gene-YKL130C_BG1 | rna-NM_001179696.1_BG1 | cds-NP_012792.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:199846-200586:- | gene-YKL130C_Bruggeman | rna-NM_001179696.1_Bruggeman | cds-NP_012792.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:195168-195908:- | gene-YKL130C_CAT1 | rna-NM_001179696.1_CAT1 | cds-NP_012792.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:194436-195176:- | gene-YKL130C_CBS1585 | rna-NM_001179696.1_CBS1585 | cds-NP_012792.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:193025-193765:- | gene-YKL130C_CBS436 | rna-NM_001179696.1_CBS436 | cds-NP_012792.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:179058-179798:- | gene-YKL130C_CBS6412 | rna-NM_001179696.1_CBS6412 | cds-NP_012792.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:194881-195621:- | gene-YKL130C_CBS6413 | rna-NM_001179696.1_CBS6413 | cds-NP_012792.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:194932-195672:- | gene-YKL130C_CENPK1137D | rna-NM_001179696.1_CENPK1137D | cds-NP_012792.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:192917-193657:- | gene-YKL130C_EthanolRed | rna-NM_001179696.1_EthanolRed | cds-NP_012792.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:193729-194469:- | gene-YKL130C_FaliES1 | rna-NM_001179696.1_FaliES1 | cds-NP_012792.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:16058-16798:- | gene-YKL130C_JAY291 | rna-NM_001179696.1_JAY291 | cds-NP_012792.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:201947-202687:- | gene-YKL130C_MUCL30387 | rna-NM_001179696.1_MUCL30387 | cds-NP_012792.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:196298-197038:- | gene-YKL130C_MUCL30388 | rna-NM_001179696.1_MUCL30388 | cds-NP_012792.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:194214-194954:- | gene-YKL130C_MUCL39482 | rna-NM_001179696.1_MUCL39482 | cds-NP_012792.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:198607-199347:- | gene-YKL130C_MUCL42920 | rna-NM_001179696.1_MUCL42920 | cds-NP_012792.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:195277-196017:- | gene-YKL130C_NCIM3186 | rna-NM_001179696.1_NCIM3186 | cds-NP_012792.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:194404-195144:- | gene-YKL130C_NCYC1407 | rna-NM_001179696.1_NCYC1407 | cds-NP_012792.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:201526-202266:- | gene-YKL130C_PE2H3 | rna-NM_001179696.1_PE2H3 | cds-NP_012792.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:197814-198554:- | gene-YKL130C_PE2H4 | rna-NM_001179696.1_PE2H4 | cds-NP_012792.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:195288-196028:- | gene-YKL130C_S288C | rna-NM_001179696.1_S288C | cds-NP_012792.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:111755-112495:- | gene-YKL130C_SA1 | rna-NM_001179696.1_SA1 | cds-NP_012792.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:194429-195169:- | gene-YKL130C_ThermosaccDry | rna-NM_001179696.1_ThermosaccDry | cds-NP_012792.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:193784-194524:- | gene-YKL130C_VR1 | rna-NM_001179696.1_VR1 | cds-NP_012792.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:192961-193701:- | gene-YKL130C_ZTW1 | rna-NM_001179696.1_ZTW1 | cds-NP_012792.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:209663-210403:- | gene-YKL130C_Sparadoxus | rna-NM_001179696.1_Sparadoxus | cds-NP_012792.1_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |