Gene name: SHC1
Reference locus (S288C): YER096W
Gene biotype: protein_coding
Description: Protein SHC1; Sporulation-specific activator of Chs3p (chitin synthase III); required for the synthesis of the chitosan layer of ascospores; transcriptionally induced at alkaline pH; SHC1 has a paralog, SKT5, that arose from the whole genome duplication
Top 10 interactors (score): CHS3 (0.823); SPS1 (0.751); SPS100 (0.713); SKM1 (0.697); YPR109W (0.694); YOS9 (0.693); DIT1 (0.679); YAR066W (0.659); PHO85 (0.639); PFS1 (0.617); GIS1 (0.587); BUD16 (0.577); SPR6 (0.572); SPR28 (0.566); BNI4 (0.562); MNL1 (0.561); SSA3 (0.553); UFD1 (0.528); SKT5 (0.526); YAR068W (0.522)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:345457-346995:+ | gene-YER096W_AKU4011 | rna-NM_001178987.1_AKU4011 | cds-NP_011022.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:78829-80367:- | gene-YER096W_BG1 | rna-NM_001178987.1_BG1 | cds-NP_011022.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:355018-356556:+ | gene-YER096W_Bruggeman | rna-NM_001178987.1_Bruggeman | cds-NP_011022.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:349371-350909:+ | gene-YER096W_CAT1 | rna-NM_001178987.1_CAT1 | cds-NP_011022.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:345322-346860:+ | gene-YER096W_CBS1585 | rna-NM_001178987.1_CBS1585 | cds-NP_011022.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:347438-348976:+ | gene-YER096W_CBS436 | rna-NM_001178987.1_CBS436 | cds-NP_011022.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:344778-346316:+ | gene-YER096W_CBS6412 | rna-NM_001178987.1_CBS6412 | cds-NP_011022.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:350768-352306:+ | gene-YER096W_CBS6413 | rna-NM_001178987.1_CBS6413 | cds-NP_011022.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:349596-351134:+ | gene-YER096W_CENPK1137D | rna-NM_001178987.1_CENPK1137D | cds-NP_011022.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:345800-347338:+ | gene-YER096W_EthanolRed | rna-NM_001178987.1_EthanolRed | cds-NP_011022.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:346245-347783:+ | gene-YER096W_FaliES1 | rna-NM_001178987.1_FaliES1 | cds-NP_011022.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000153.1:61316-62854:+ | gene-YER096W_JAY291 | rna-NM_001178987.1_JAY291 | cds-NP_011022.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:350416-351954:+ | gene-YER096W_MUCL30387 | rna-NM_001178987.1_MUCL30387 | cds-NP_011022.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:346090-347628:+ | gene-YER096W_MUCL30388 | rna-NM_001178987.1_MUCL30388 | cds-NP_011022.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:344346-345884:+ | gene-YER096W_MUCL39482 | rna-NM_001178987.1_MUCL39482 | cds-NP_011022.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:351555-353093:+ | gene-YER096W_MUCL42920 | rna-NM_001178987.1_MUCL42920 | cds-NP_011022.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:351697-353235:+ | gene-YER096W_NCIM3186 | rna-NM_001178987.1_NCIM3186 | cds-NP_011022.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:349409-350947:+ | gene-YER096W_NCYC1407 | rna-NM_001178987.1_NCYC1407 | cds-NP_011022.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:360071-361609:+ | gene-YER096W_PE2H3 | rna-NM_001178987.1_PE2H3 | cds-NP_011022.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:350012-351550:+ | gene-YER096W_PE2H4 | rna-NM_001178987.1_PE2H4 | cds-NP_011022.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:351698-353236:+ | gene-YER096W_S288C | rna-NM_001178987.1_S288C | cds-NP_011022.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:61315-62853:+ | gene-YER096W_SA1 | rna-NM_001178987.1_SA1 | cds-NP_011022.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:347042-348580:+ | gene-YER096W_ThermosaccDry | rna-NM_001178987.1_ThermosaccDry | cds-NP_011022.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:347713-349251:+ | gene-YER096W_VR1 | rna-NM_001178987.1_VR1 | cds-NP_011022.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:344209-345747:+ | gene-YER096W_ZTW1 | rna-NM_001178987.1_ZTW1 | cds-NP_011022.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:347618-349180:+ | gene-YER096W_Sparadoxus | rna-NM_001178987.1_Sparadoxus | cds-NP_011022.1_Sparadoxus | 86.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |