Gene name: SGV1
Reference locus (S288C): YPR161C
Gene biotype: protein_coding
Description: Serine/threonine-protein kinase BUR1; Cyclin (Bur2p)-dependent protein kinase; part of the BUR kinase complex which functions in transcriptional regulation; phosphorylates the carboxy-terminal domain (CTD) of Rpo21p and the C-terminal repeat domain of Spt5p; recruits Spt6p to the CTD at the onset of transcription; regulated by Cak1p; similar to metazoan CDK9 proteins
Top 10 interactors (score): CTK2 (0.999); BUR2 (0.999); RPO21 (0.999); SPT5 (0.999); SPT4 (0.985); FCP1 (0.973); SET2 (0.966); CTK1 (0.963); SPT16 (0.93); SER2 (0.928); SSU72 (0.92); SPT6 (0.918); DST1 (0.914); CCL1 (0.898); RPB3 (0.891); CTR9 (0.887); SET1 (0.874); THR4 (0.863); CTK3 (0.861); CDC73 (0.861)
Homologues (species, bitscore): CDK11B (Homo sapiens, 237.7); Cdk11b (Mus musculus, 238.8); cdk13 (Danio rerio, 245.4); cdk9 (Xenopus tropicalis, 236.1); Cdk9 (Drosophila melanogaster, 249.2); cdk-9 (Caenorhabditis elegans, 244.2); AT1G67580 (Arabidopsis thaliana, 251.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:818726-820699:- | gene-YPR161C_AKU4011 | rna-NM_001184258.1_AKU4011 | cds-NP_015487.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:77017-78990:+ | gene-YPR161C_BG1 | rna-NM_001184258.1_BG1 | cds-NP_015487.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:898918-900891:- | gene-YPR161C_Bruggeman | rna-NM_001184258.1_Bruggeman | cds-NP_015487.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:941524-943497:- | gene-YPR161C_CAT1 | rna-NM_001184258.1_CAT1 | cds-NP_015487.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:823526-825499:- | gene-YPR161C_CBS1585 | rna-NM_001184258.1_CBS1585 | cds-NP_015487.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:837081-839054:- | gene-YPR161C_CBS436 | rna-NM_001184258.1_CBS436 | cds-NP_015487.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:825390-827363:- | gene-YPR161C_CBS6412 | rna-NM_001184258.1_CBS6412 | cds-NP_015487.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:820456-822429:- | gene-YPR161C_CBS6413 | rna-NM_001184258.1_CBS6413 | cds-NP_015487.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:864460-866433:- | gene-YPR161C_CENPK1137D | rna-NM_001184258.1_CENPK1137D | cds-NP_015487.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1140360-1142333:- | gene-YPR161C_EthanolRed | rna-NM_001184258.1_EthanolRed | cds-NP_015487.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:820066-822039:- | gene-YPR161C_FaliES1 | rna-NM_001184258.1_FaliES1 | cds-NP_015487.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:7856-9830:- | gene-YPR161C_JAY291 | rna-NM_001184258.1_JAY291 | cds-NP_015487.1_JAY291 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:867003-868976:- | gene-YPR161C_MUCL30387 | rna-NM_001184258.1_MUCL30387 | cds-NP_015487.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:839582-841555:- | gene-YPR161C_MUCL30388 | rna-NM_001184258.1_MUCL30388 | cds-NP_015487.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:815728-817701:- | gene-YPR161C_MUCL39482 | rna-NM_001184258.1_MUCL39482 | cds-NP_015487.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:879390-881363:- | gene-YPR161C_MUCL42920 | rna-NM_001184258.1_MUCL42920 | cds-NP_015487.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:864432-866405:- | gene-YPR161C_NCIM3186 | rna-NM_001184258.1_NCIM3186 | cds-NP_015487.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:824089-826062:- | gene-YPR161C_NCYC1407 | rna-NM_001184258.1_NCYC1407 | cds-NP_015487.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:836381-838354:- | gene-YPR161C_PE2H3 | rna-NM_001184258.1_PE2H3 | cds-NP_015487.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:836029-838002:- | gene-YPR161C_PE2H4 | rna-NM_001184258.1_PE2H4 | cds-NP_015487.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:864449-866422:- | gene-YPR161C_S288C | rna-NM_001184258.1_S288C | cds-NP_015487.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:59737-61710:+ | gene-YPR161C_SA1 | rna-NM_001184258.1_SA1 | cds-NP_015487.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:819754-821727:- | gene-YPR161C_ThermosaccDry | rna-NM_001184258.1_ThermosaccDry | cds-NP_015487.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:848036-850009:- | gene-YPR161C_VR1 | rna-NM_001184258.1_VR1 | cds-NP_015487.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:822876-824849:- | gene-YPR161C_ZTW1 | rna-NM_001184258.1_ZTW1 | cds-NP_015487.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:824940-826913:- | gene-YPR161C_Sparadoxus | rna-NM_001184258.1_Sparadoxus | cds-NP_015487.1_Sparadoxus | 90.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |