Gene name: SGN1
Reference locus (S288C): YIR001C
Gene biotype: protein_coding
Description: Cytoplasmic RNA-binding protein; contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation
Top 10 interactors (score): PAP1 (0.971); RIE1 (0.957); RRP6 (0.933); PAB1 (0.928); TIF4632 (0.923); TIF4631 (0.893); NAB2 (0.87); HMT1 (0.866); RNA14 (0.863); FIP1 (0.856); CDC33 (0.849); PHO92 (0.836); CBC2 (0.834); PUB1 (0.826); MTR4 (0.821); RNA15 (0.813); FAL1 (0.791); YTH1 (0.79); NAM7 (0.786); TRF5 (0.782)
Homologues (species, bitscore): PABPN1L (Homo sapiens, 89.0); Gm20521 (Mus musculus, 88.6); pabpn1 (Danio rerio, 90.5); pabpn1 (Xenopus tropicalis, 89.4); Pabp2 (Drosophila melanogaster, 92.0); pabp-2 (Caenorhabditis elegans, 90.9); PABN1 (Arabidopsis thaliana, 102.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:355486-356238:- | gene-YIR001C_AKU4011 | rna-NM_001179523.1_AKU4011 | cds-NP_012266.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000072.1:70318-71070:+ | gene-YIR001C_BG1 | rna-NM_001179523.1_BG1 | cds-NP_012266.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:360004-360756:- | gene-YIR001C_Bruggeman | rna-NM_001179523.1_Bruggeman | cds-NP_012266.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:346638-347390:- | gene-YIR001C_CAT1 | rna-NM_001179523.1_CAT1 | cds-NP_012266.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:355555-356307:- | gene-YIR001C_CBS1585 | rna-NM_001179523.1_CBS1585 | cds-NP_012266.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:348290-349042:- | gene-YIR001C_CBS436 | rna-NM_001179523.1_CBS436 | cds-NP_012266.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:350965-351717:- | gene-YIR001C_CBS6412 | rna-NM_001179523.1_CBS6412 | cds-NP_012266.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:347635-348387:- | gene-YIR001C_CBS6413 | rna-NM_001179523.1_CBS6413 | cds-NP_012266.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:348204-348956:- | gene-YIR001C_CENPK1137D | rna-NM_001179523.1_CENPK1137D | cds-NP_012266.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:338599-339351:- | gene-YIR001C_EthanolRed | rna-NM_001179523.1_EthanolRed | cds-NP_012266.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:356843-357595:- | gene-YIR001C_FaliES1 | rna-NM_001179523.1_FaliES1 | cds-NP_012266.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000009.1:33900-34652:+ | gene-YIR001C_JAY291 | rna-NM_001179523.1_JAY291 | cds-NP_012266.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:357179-357931:- | gene-YIR001C_MUCL30387 | rna-NM_001179523.1_MUCL30387 | cds-NP_012266.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:353917-354669:- | gene-YIR001C_MUCL30388 | rna-NM_001179523.1_MUCL30388 | cds-NP_012266.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:356192-356944:- | gene-YIR001C_MUCL39482 | rna-NM_001179523.1_MUCL39482 | cds-NP_012266.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:359813-360565:- | gene-YIR001C_MUCL42920 | rna-NM_001179523.1_MUCL42920 | cds-NP_012266.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:356143-356895:- | gene-YIR001C_NCIM3186 | rna-NM_001179523.1_NCIM3186 | cds-NP_012266.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:360437-361189:- | gene-YIR001C_NCYC1407 | rna-NM_001179523.1_NCYC1407 | cds-NP_012266.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:350216-350968:- | gene-YIR001C_PE2H3 | rna-NM_001179523.1_PE2H3 | cds-NP_012266.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:344922-345674:- | gene-YIR001C_PE2H4 | rna-NM_001179523.1_PE2H4 | cds-NP_012266.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:356143-356895:- | gene-YIR001C_S288C | rna-NM_001179523.1_S288C | cds-NP_012266.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000066.1:30977-31729:- | gene-YIR001C_SA1 | rna-NM_001179523.1_SA1 | cds-NP_012266.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:354948-355700:- | gene-YIR001C_ThermosaccDry | rna-NM_001179523.1_ThermosaccDry | cds-NP_012266.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:350777-351529:- | gene-YIR001C_VR1 | rna-NM_001179523.1_VR1 | cds-NP_012266.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:328952-329704:- | gene-YIR001C_ZTW1 | rna-NM_001179523.1_ZTW1 | cds-NP_012266.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:350277-351029:- | gene-YIR001C_Sparadoxus | rna-NM_001179523.1_Sparadoxus | cds-NP_012266.1_Sparadoxus | 88.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |