Gene name: SGM1
Reference locus (S288C): YJR134C
Gene biotype: protein_coding
Description: Tata element modulatory factor; Protein of unknown function; required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus; Belongs to the SGM1 family
Top 10 interactors (score): YPT6 (0.994); RUD3 (0.928); COY1 (0.909); USO1 (0.774); SRP14 (0.673); GOS1 (0.672); GLY1 (0.647); SYS1 (0.647); ARL1 (0.619); YNR065C (0.612); YPT52 (0.611); KRE29 (0.609); NBP35 (0.608); COG3 (0.605); ARL3 (0.6); VPS20 (0.599); GPI11 (0.568); MTQ1 (0.563); SPT5 (0.549); SEC28 (0.547)
Homologues (species, bitscore): LAMA2 (Homo sapiens, 54.3); Tmf1 (Mus musculus, 56.6); lama5 (Danio rerio, 52.8); epi-1 (Caenorhabditis elegans, 54.7); GC5 (Arabidopsis thaliana, 58.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:645227-647350:- | gene-YJR134C_AKU4011 | rna-NM_001181792.3_AKU4011 | cds-NP_012668.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000076.1:26250-28373:+ | gene-YJR134C_BG1 | rna-NM_001181792.3_BG1 | cds-NP_012668.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:660957-663080:- | gene-YJR134C_Bruggeman | rna-NM_001181792.3_Bruggeman | cds-NP_012668.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:665596-667719:- | gene-YJR134C_CAT1 | rna-NM_001181792.3_CAT1 | cds-NP_012668.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:657271-659394:- | gene-YJR134C_CBS1585 | rna-NM_001181792.3_CBS1585 | cds-NP_012668.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:676143-678266:- | gene-YJR134C_CBS436 | rna-NM_001181792.3_CBS436 | cds-NP_012668.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:644048-646171:- | gene-YJR134C_CBS6412 | rna-NM_001181792.3_CBS6412 | cds-NP_012668.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:646705-648828:- | gene-YJR134C_CBS6413 | rna-NM_001181792.3_CBS6413 | cds-NP_012668.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:656089-658212:- | gene-YJR134C_CENPK1137D | rna-NM_001181792.3_CENPK1137D | cds-NP_012668.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:649648-651771:- | gene-YJR134C_EthanolRed | rna-NM_001181792.3_EthanolRed | cds-NP_012668.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:661111-663234:- | gene-YJR134C_FaliES1 | rna-NM_001181792.3_FaliES1 | cds-NP_012668.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:25923-28046:+ | gene-YJR134C_JAY291 | rna-NM_001181792.3_JAY291 | cds-NP_012668.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:659988-662111:- | gene-YJR134C_MUCL30387 | rna-NM_001181792.3_MUCL30387 | cds-NP_012668.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:657472-659595:- | gene-YJR134C_MUCL30388 | rna-NM_001181792.3_MUCL30388 | cds-NP_012668.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:650756-652879:- | gene-YJR134C_MUCL39482 | rna-NM_001181792.3_MUCL39482 | cds-NP_012668.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:655493-657616:- | gene-YJR134C_MUCL42920 | rna-NM_001181792.3_MUCL42920 | cds-NP_012668.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:673708-675831:- | gene-YJR134C_NCIM3186 | rna-NM_001181792.3_NCIM3186 | cds-NP_012668.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:648305-650428:- | gene-YJR134C_NCYC1407 | rna-NM_001181792.3_NCYC1407 | cds-NP_012668.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:666495-668618:- | gene-YJR134C_PE2H3 | rna-NM_001181792.3_PE2H3 | cds-NP_012668.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:660184-662307:- | gene-YJR134C_PE2H4 | rna-NM_001181792.3_PE2H4 | cds-NP_012668.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:673729-675852:- | gene-YJR134C_S288C | rna-NM_001181792.3_S288C | cds-NP_012668.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000069.1:26275-28398:+ | gene-YJR134C_SA1 | rna-NM_001181792.3_SA1 | cds-NP_012668.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:655042-657165:- | gene-YJR134C_ThermosaccDry | rna-NM_001181792.3_ThermosaccDry | cds-NP_012668.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:657415-659538:- | gene-YJR134C_VR1 | rna-NM_001181792.3_VR1 | cds-NP_012668.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:634391-636514:- | gene-YJR134C_ZTW1 | rna-NM_001181792.3_ZTW1 | cds-NP_012668.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:668677-670800:- | gene-YJR134C_Sparadoxus | rna-NM_001181792.3_Sparadoxus | cds-NP_012668.3_Sparadoxus | 87.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |