Gene name: SGF29
Reference locus (S288C): YCL010C
Gene biotype: protein_coding
Description: SAGA-associated factor 29; Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes; HAT/Core module also contains Gcn5p, Ngg1p, and Ada2p; binds methylated histone H3K4; involved in transcriptional regulation through SAGA and TBP recruitment to target promoters and H3 acetylation; Belongs to the SGF29 family
Top 10 interactors (score): SPT20 (0.999); ADA2 (0.999); NGG1 (0.999); HFI1 (0.999); SPT7 (0.999); SPT3 (0.999); TAF6 (0.999); TAF5 (0.999); TRA1 (0.999); TAF12 (0.999); SGF73 (0.999); SGF11 (0.999); GCN5 (0.999); UBP8 (0.999); TAF10 (0.998); SPT8 (0.998); TAF9 (0.997); CHD1 (0.993); NAT5 (0.984); SUS1 (0.98)
Homologues (species, bitscore): SGF29b (Arabidopsis thaliana, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:98281-99060:- | gene-YCL010C_AKU4011 | rna-NM_001178659.1_AKU4011 | cds-NP_009917.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:46974-47753:+ | gene-YCL010C_BG1 | rna-NM_001178659.1_BG1 | cds-NP_009917.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:92866-93645:- | gene-YCL010C_Bruggeman | rna-NM_001178659.1_Bruggeman | cds-NP_009917.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:98012-98791:- | gene-YCL010C_CAT1 | rna-NM_001178659.1_CAT1 | cds-NP_009917.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:98930-99709:- | gene-YCL010C_CBS1585 | rna-NM_001178659.1_CBS1585 | cds-NP_009917.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:103847-104626:- | gene-YCL010C_CBS436 | rna-NM_001178659.1_CBS436 | cds-NP_009917.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:86389-87168:- | gene-YCL010C_CBS6412 | rna-NM_001178659.1_CBS6412 | cds-NP_009917.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:98237-99016:- | gene-YCL010C_CBS6413 | rna-NM_001178659.1_CBS6413 | cds-NP_009917.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:103046-103825:- | gene-YCL010C_CENPK1137D | rna-NM_001178659.1_CENPK1137D | cds-NP_009917.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:96299-97078:- | gene-YCL010C_EthanolRed | rna-NM_001178659.1_EthanolRed | cds-NP_009917.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:98592-99371:- | gene-YCL010C_FaliES1 | rna-NM_001178659.1_FaliES1 | cds-NP_009917.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000126.1:12766-13545:- | gene-YCL010C_JAY291 | rna-NM_001178659.1_JAY291 | cds-NP_009917.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:91301-92080:- | gene-YCL010C_MUCL30387 | rna-NM_001178659.1_MUCL30387 | cds-NP_009917.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:90858-91637:- | gene-YCL010C_MUCL30388 | rna-NM_001178659.1_MUCL30388 | cds-NP_009917.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:99347-100126:- | gene-YCL010C_MUCL39482 | rna-NM_001178659.1_MUCL39482 | cds-NP_009917.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:94581-95360:- | gene-YCL010C_MUCL42920 | rna-NM_001178659.1_MUCL42920 | cds-NP_009917.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:103203-103982:- | gene-YCL010C_NCIM3186 | rna-NM_001178659.1_NCIM3186 | cds-NP_009917.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:99829-100608:- | gene-YCL010C_NCYC1407 | rna-NM_001178659.1_NCYC1407 | cds-NP_009917.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:103999-104778:- | gene-YCL010C_PE2H3 | rna-NM_001178659.1_PE2H3 | cds-NP_009917.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:103959-104738:- | gene-YCL010C_PE2H4 | rna-NM_001178659.1_PE2H4 | cds-NP_009917.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:103571-104350:- | gene-YCL010C_S288C | rna-NM_001178659.1_S288C | cds-NP_009917.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:46989-47768:+ | gene-YCL010C_SA1 | rna-NM_001178659.1_SA1 | cds-NP_009917.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:99165-99944:- | gene-YCL010C_ThermosaccDry | rna-NM_001178659.1_ThermosaccDry | cds-NP_009917.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:109806-110585:- | gene-YCL010C_VR1 | rna-NM_001178659.1_VR1 | cds-NP_009917.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:98104-98883:- | gene-YCL010C_ZTW1 | rna-NM_001178659.1_ZTW1 | cds-NP_009917.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:128346-129125:- | gene-YCL010C_Sparadoxus | rna-NM_001178659.1_Sparadoxus | cds-NP_009917.1_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |