Gene name: SGD1
Reference locus (S288C): YLR336C
Gene biotype: protein_coding
Description: Suppressor of glycerol defect protein 1; Essential nuclear protein; required for biogenesis of the small ribosomal subunit; has a possible role in the osmoregulatory glycerol response; putative homolog of human NOM1 which is implicated in acute myeloid leukemia
Top 10 interactors (score): KRR1 (0.999); FAL1 (0.999); RRP9 (0.999); UTP30 (0.999); HCA4 (0.999); NOC4 (0.999); DHR2 (0.998); SAS10 (0.997); DIP2 (0.992); MRD1 (0.991); MPP10 (0.988); KRE33 (0.987); RRP36 (0.987); UTP25 (0.984); DRS1 (0.984); UTP6 (0.981); NOC2 (0.977); SPB1 (0.977); NOC3 (0.976); DBP10 (0.971)
Homologues (species, bitscore): NOM1 (Homo sapiens, 210.7); Nom1 (Mus musculus, 209.9); nom1 (Danio rerio, 213.4); nom1 (Xenopus tropicalis, 213.8); CG9004 (Drosophila melanogaster, 204.1); Y52B11A.10 (Caenorhabditis elegans, 107.8); AT5G17930 (Arabidopsis thaliana, 148.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:749221-751920:- | gene-YLR336C_AKU4011 | rna-NM_001182225.1_AKU4011 | cds-NP_013440.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:15787-18486:- | gene-YLR336C_BG1 | rna-NM_001182225.1_BG1 | cds-NP_013440.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:785569-788268:- | gene-YLR336C_Bruggeman | rna-NM_001182225.1_Bruggeman | cds-NP_013440.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:782528-785227:- | gene-YLR336C_CAT1 | rna-NM_001182225.1_CAT1 | cds-NP_013440.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:784274-786973:- | gene-YLR336C_CBS1585 | rna-NM_001182225.1_CBS1585 | cds-NP_013440.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:767584-770283:- | gene-YLR336C_CBS436 | rna-NM_001182225.1_CBS436 | cds-NP_013440.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:821265-823964:- | gene-YLR336C_CBS6412 | rna-NM_001182225.1_CBS6412 | cds-NP_013440.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:785135-787834:- | gene-YLR336C_CBS6413 | rna-NM_001182225.1_CBS6413 | cds-NP_013440.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:784314-787013:- | gene-YLR336C_CENPK1137D | rna-NM_001182225.1_CENPK1137D | cds-NP_013440.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:741439-744138:- | gene-YLR336C_EthanolRed | rna-NM_001182225.1_EthanolRed | cds-NP_013440.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:770640-773339:- | gene-YLR336C_FaliES1 | rna-NM_001182225.1_FaliES1 | cds-NP_013440.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000315.1:15886-18585:+ | gene-YLR336C_JAY291 | rna-NM_001182225.1_JAY291 | cds-NP_013440.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:784022-786721:- | gene-YLR336C_MUCL30387 | rna-NM_001182225.1_MUCL30387 | cds-NP_013440.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:789368-792067:- | gene-YLR336C_MUCL30388 | rna-NM_001182225.1_MUCL30388 | cds-NP_013440.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:785493-788192:- | gene-YLR336C_MUCL39482 | rna-NM_001182225.1_MUCL39482 | cds-NP_013440.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:780769-783468:- | gene-YLR336C_MUCL42920 | rna-NM_001182225.1_MUCL42920 | cds-NP_013440.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:799671-802370:- | gene-YLR336C_NCIM3186 | rna-NM_001182225.1_NCIM3186 | cds-NP_013440.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:794713-797412:- | gene-YLR336C_NCYC1407 | rna-NM_001182225.1_NCYC1407 | cds-NP_013440.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:781347-784046:- | gene-YLR336C_PE2H3 | rna-NM_001182225.1_PE2H3 | cds-NP_013440.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:781091-783790:- | gene-YLR336C_PE2H4 | rna-NM_001182225.1_PE2H4 | cds-NP_013440.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:799697-802396:- | gene-YLR336C_S288C | rna-NM_001182225.1_S288C | cds-NP_013440.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:246572-249271:+ | gene-YLR336C_SA1 | rna-NM_001182225.1_SA1 | cds-NP_013440.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:772532-775231:- | gene-YLR336C_ThermosaccDry | rna-NM_001182225.1_ThermosaccDry | cds-NP_013440.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:785589-788288:- | gene-YLR336C_VR1 | rna-NM_001182225.1_VR1 | cds-NP_013440.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:110921-113620:- | gene-YLR336C_ZTW1 | rna-NM_001182225.1_ZTW1 | cds-NP_013440.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:758911-761610:- | gene-YLR336C_Sparadoxus | rna-NM_001182225.1_Sparadoxus | cds-NP_013440.1_Sparadoxus | 88.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |